Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001661-TA|BGIBMGA001661-PA|IPR007087|Zinc finger,
C2H2-type
(164 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 56 2e-09
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 50 2e-07
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 48 9e-07
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 46 3e-06
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 45 5e-06
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 45 5e-06
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 43 2e-05
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 43 3e-05
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 43 3e-05
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 42 6e-05
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 40 1e-04
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 36 0.003
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 30 0.15
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 30 0.15
SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni... 28 0.80
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual 27 1.1
SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|c... 26 2.4
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 25 4.3
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 25 5.6
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 25 5.6
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 24 9.8
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 24 9.8
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 56.4 bits (130), Expect = 2e-09
Identities = 45/150 (30%), Positives = 62/150 (41%), Gaps = 11/150 (7%)
Query: 19 DCGKFFCNKYSLAVHLREHSEHVGKRYECDDCGL-KYYTRRSIVRHITSAHLGGATEHKC 77
+CGK + L HLR HS + + CD G K + R+S ++ H C
Sbjct: 29 ECGKKYSRPSLLEQHLRTHSNE--RPFVCDYTGCSKAFYRKSHLKIHKRCHTN-VKPFSC 85
Query: 78 --PRCDKIFATAHHKRRHMRLKHESKKMPRDKICEICASSFTSSKMLKAHIRT-HTGERP 134
CD F T H RH+ + + K P E C F+ + L++HI HT P
Sbjct: 86 HYDGCDAQFYTQQHLERHIEVHRKPK--PYACTWEGCDECFSKHQQLRSHISACHTHLLP 143
Query: 135 YVCPV--CEATFAHSGTLYNHKRLMHGRAL 162
Y C CE FA L NH H + +
Sbjct: 144 YPCTYQDCELRFATKQKLQNHVNRAHEKII 173
Score = 53.2 bits (122), Expect = 2e-08
Identities = 42/141 (29%), Positives = 58/141 (41%), Gaps = 11/141 (7%)
Query: 19 DCGKFFCNKYSLAVHL-REHSEHVGKRYECDDC-GLKYYTRRS-IVRHITSAHLGGATEH 75
DC F K L H+ R H + + + C G + + + S + HI AH+
Sbjct: 150 DCELRFATKQKLQNHVNRAHEKIISYSCPHESCVGHEGFEKWSQLQNHIREAHVPS---- 205
Query: 76 KCPRCDKIFATAHHKRRHMRLKHESKKMPRDKIC--EICASSFTSSKMLKAHIRT-HTGE 132
C C + F TA H R H+ L + + + C E C SFT S LK HI H G
Sbjct: 206 -CSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGN 264
Query: 133 RPYVCPVCEATFAHSGTLYNH 153
+ C C F + L H
Sbjct: 265 MAFHCDSCGTKFGYKHMLQRH 285
Score = 41.5 bits (93), Expect = 6e-05
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 110 EICASSFTSSKMLKAHIRTHTGERPYVCPV--CEATFAHSGTLYNHKR 155
E C ++ +L+ H+RTH+ ERP+VC C F L HKR
Sbjct: 28 EECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKR 75
Score = 40.7 bits (91), Expect = 1e-04
Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 7/143 (4%)
Query: 25 CNKYSLAVHLREHSEHVGKR-YEC--DDCGLKYYTRRSIVRHITSAHLGGATEHKCPRCD 81
C+ L++ + + K+ + C ++CG KY + +H+ + C
Sbjct: 2 CHFNELSIEIESKNLRSAKKIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCS 61
Query: 82 KIFATAHHKRRHMRLKHESKKMPRDKICEICASSFTSSKMLKAHIRTHTGERPYVC--PV 139
K F H + H R H + K P + C + F + + L+ HI H +PY C
Sbjct: 62 KAFYRKSHLKIHKRC-HTNVK-PFSCHYDGCDAQFYTQQHLERHIEVHRKPKPYACTWEG 119
Query: 140 CEATFAHSGTLYNHKRLMHGRAL 162
C+ F+ L +H H L
Sbjct: 120 CDECFSKHQQLRSHISACHTHLL 142
Score = 35.1 bits (77), Expect = 0.005
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 17 CVDCGKFFCNKYSLAVHLREHSEHVGKR--YECDDCGLKY-YTRRSIVR-HITSAHLGGA 72
C CG+ F L H+ H + +R Y C G K +TR S ++ HI+ H G
Sbjct: 206 CSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNM 265
Query: 73 TEHKCPRCDKIFATAHHKRRHM 94
H C C F H +RH+
Sbjct: 266 AFH-CDSCGTKFGYKHMLQRHL 286
Score = 27.1 bits (57), Expect = 1.4
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 10 DGGQESYCVDCGKFFCNKYSLAVHLREHSEHVGKRYECDDCGLKY 54
+G +C CG F K+ L HL + + ++CG+K+
Sbjct: 262 EGNMAFHCDSCGTKFGYKHMLQRHLERGTCKKAHKPYINECGIKH 306
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 50.0 bits (114), Expect = 2e-07
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 104 PRDKICEICASSFTSSKMLKAHIRTHTGERPYVC--PVCEATFAHSGTLYNHKRL 156
PR C +C +F + HIRTHTGE+P+VC P C F+ S L H R+
Sbjct: 23 PRPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARI 77
Score = 40.3 bits (90), Expect = 1e-04
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 75 HKCPRCDKIFATAHHKRRHMRLKHESKKMPRDKICEICASSFTSSKMLKAHIRTHT 130
+KCP C K F H+ RH+R H +K P CA F+ S L H R HT
Sbjct: 26 YKCPLCTKAFYRLEHQTRHIR-THTGEK-PHVCTFPGCAKRFSRSDELTRHARIHT 79
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 47.6 bits (108), Expect = 9e-07
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 117 TSSKMLKAHIRTHTGERPYVC--PVCEATFAHSGTLYNHKRLMH 158
TS L AH+R+HTGE+P++C P C+ +F S L H R +H
Sbjct: 88 TSRFALVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRTVH 131
Score = 35.9 bits (79), Expect = 0.003
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 39 EHVGKR---YEC--DDC---GLKYYTRRSIVRHITSAHLGGATEH-KCPRCDKIFATAHH 89
+H+G R Y C DDC G+ +R ++V H+ S H G P CD+ F +
Sbjct: 64 DHIGNRRPKYTCEWDDCPRKGMVQTSRFALVAHLRS-HTGEKPFICSVPECDRSFTRSDA 122
Query: 90 KRRHMRLKHESKKM-PRDKI 108
+HMR HE+ + P D I
Sbjct: 123 LAKHMRTVHEADTLRPSDPI 142
Score = 24.6 bits (51), Expect = 7.4
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 77 CPRCDKIFATAHHKRRHMRLKHESKKMPRDKICEI--CASSFTSSKMLKAHIRT 128
CPR + + H+R H +K IC + C SFT S L H+RT
Sbjct: 80 CPRKGMVQTSRFALVAHLR-SHTGEK---PFICSVPECDRSFTRSDALAKHMRT 129
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 46.0 bits (104), Expect = 3e-06
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 95 RLKHESKKMPRDKICEI--CASSFTSSKMLKAHIRTHTGERPYVCPVCEATFAHSGTLYN 152
+ K ESK + +C C FT + LK+H+ THT RP+ C +C+ +FA
Sbjct: 559 KAKSESKSQG-NYVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRR 617
Query: 153 HKRLMHG 159
H++L G
Sbjct: 618 HEQLHTG 624
Score = 42.3 bits (95), Expect = 3e-05
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 80 CDKIFATAHHKRRHMRLKHESKKMPRDKICEICASSFTSSKMLKAHIRTHTGERPYVCPV 139
C+K F A++ + HM + C IC SF + H + HTG + + C
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQ----CSICKKSFARQHDKRRHEQLHTGIKAFACVT 632
Query: 140 CEATFAHSGTLYNH 153
C FA L H
Sbjct: 633 CNQRFARMDALNRH 646
Score = 34.7 bits (76), Expect = 0.007
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 45 YECDDCGL-KYYTRRSIVRHITSAHLGGATEHKCPRCDKIFATAHHKRRHMRLKHESKKM 103
Y C G K +TR ++ + H +C C K FA H KRRH +L K
Sbjct: 570 YVCTFAGCNKRFTRAYNLKSHMNTHTN-YRPFQCSICKKSFARQHDKRRHEQLHTGIKAF 628
Query: 104 PRDKICEICASSFTSSKMLKAHIRTHTGE 132
C C F L H ++ G+
Sbjct: 629 ----ACVTCNQRFARMDALNRHYKSEVGQ 653
Score = 33.1 bits (72), Expect = 0.021
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 20 CGKFFCNKYSLAVHLREHSEHVGKRYECDDCGLKYYTRRSIVRHITSAHLGGATEHKCPR 79
C K F Y+L H+ H+ + + ++C C K + R+ R H G C
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNY--RPFQCSIC-KKSFARQHDKRRHEQLHT-GIKAFACVT 632
Query: 80 CDKIFATAHHKRRHMR 95
C++ FA RH +
Sbjct: 633 CNQRFARMDALNRHYK 648
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 45.2 bits (102), Expect = 5e-06
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 108 ICEICASSFTSSKMLKAHIRT-HTGERPYVCPVCEATFAHSGTLYNHKRL 156
+C C+ F S+ L+ HIR+ HT E+P+VC +C F+ L H+RL
Sbjct: 424 VCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQHERL 472
Score = 44.8 bits (101), Expect = 7e-06
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 49 DCGLKYYTRRSIVRHITSAHLG-GATEHKCPRCDKIFATAHHKRRHMRLKHESKKMPRDK 107
D +K RR TS G CP C K F + H RRH+R H S+K
Sbjct: 396 DGSMKRRKRRQPSNRKTSVPRSPGGKSFVCPECSKKFKRSEHLRRHIRSLHTSEK---PF 452
Query: 108 ICEICASSFTSSKMLKAHIRTHTGERP 134
+C IC F+ L+ H R H P
Sbjct: 453 VC-ICGKRFSRRDNLRQHERLHVNASP 478
Score = 31.5 bits (68), Expect = 0.065
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 42 GKRYECDDCGLKYYTRRSIVRHITSAHLGGATEHKCPRCDKIFATAHHKRRHMRL 96
GK + C +C K+ + RHI S H C C K F+ + R+H RL
Sbjct: 420 GKSFVCPECSKKFKRSEHLRRHIRSLHT-SEKPFVC-ICGKRFSRRDNLRQHERL 472
Score = 30.3 bits (65), Expect = 0.15
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 3 RLSAHSGDGGQESYCVDCGKFFCNKYSLAVHLREH--SEHVGKRYECDDCGLKYYTRRSI 60
+ S GG+ C +C K K+ + HLR H S H ++ CG K ++RR
Sbjct: 411 KTSVPRSPGGKSFVCPECSK----KFKRSEHLRRHIRSLHTSEKPFVCICG-KRFSRRDN 465
Query: 61 VRHITSAHLGGATEHKC 77
+R H+ + C
Sbjct: 466 LRQHERLHVNASPRLAC 482
Score = 28.3 bits (60), Expect = 0.60
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 123 KAHIRTHTGERPYVCPVCEATFAHSGTLYNHKRLMH 158
K + G + +VCP C F S L H R +H
Sbjct: 411 KTSVPRSPGGKSFVCPECSKKFKRSEHLRRHIRSLH 446
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 45.2 bits (102), Expect = 5e-06
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 112 CASSFTSSKMLKAHIRTHTGERPYVCPVCEATFAHSGTLYNHKRLMH 158
C SFT + + H R+HT + ++CP C ++F S L H H
Sbjct: 24 CTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKH 70
Score = 40.7 bits (91), Expect = 1e-04
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 67 AHLGGATEHKCP--RCDKIFATAHHKRRHMRLKHESKKMPRDKICEICASSFTSSKMLKA 124
A+ G +KC C K F H RRH R SK IC C+SSFT S +L
Sbjct: 9 AYQEGDIRYKCDFQGCTKSFTRKEHARRHFRSHTNSKAF----ICPHCSSSFTRSDVLNR 64
Query: 125 HI 126
H+
Sbjct: 65 HV 66
Score = 32.3 bits (70), Expect = 0.037
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 44 RYECDDCGL-KYYTRRSIVRHITSAHLGGATEHKCPRCDKIFATAHHKRRHMRLKH 98
RY+CD G K +TR+ R +H CP C F + RH+ KH
Sbjct: 16 RYKCDFQGCTKSFTRKEHARRHFRSHTNSKA-FICPHCSSSFTRSDVLNRHVNQKH 70
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 43.2 bits (97), Expect = 2e-05
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 80 CDKIFATAHHKRRHMRLKHESKKMPRDKICEICASSFTSSKMLKAHIRTHTGERPYVCPV 139
C+K A ++ H++ H S + R C++C + F LK H+R H RPYVC
Sbjct: 450 CNKRIARKYNVESHIQT-HLSDRPYR---CDLCKAGFVRHHDLKRHLRIHENGRPYVCE- 504
Query: 140 CEATFAHSGTLYNHKR 155
C F L HK+
Sbjct: 505 CLKRFNRLDALNRHKQ 520
Score = 38.3 bits (85), Expect = 6e-04
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 112 CASSFTSSKMLKAHIRTHTGERPYVCPVCEATFAHSGTLYNHKRL 156
C +++HI+TH +RPY C +C+A F L H R+
Sbjct: 450 CNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRI 494
Score = 34.3 bits (75), Expect = 0.009
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 20 CGKFFCNKYSLAVHLREHSEHVGKRYECDDCGLKYYTRRSIVRHITSAHLGGATEHKC-P 78
C K KY++ H++ H + Y CD C + + RH+ G +C
Sbjct: 450 CNKRIARKYNVESHIQTHLS--DRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVCECLK 507
Query: 79 RCDKIFATAHHKRRHM 94
R +++ A HK+R++
Sbjct: 508 RFNRLDALNRHKQRNI 523
Score = 30.7 bits (66), Expect = 0.11
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 44 RYEC--DDCGLKYYTRRSIVRHITSAHLGGATEHKCPRCDKIFATAHHKRRHMRLKHESK 101
+Y C + C + + ++ HI + HL ++C C F H +RH+R+ HE+
Sbjct: 442 KYVCLYNGCNKRIARKYNVESHIQT-HLSDRP-YRCDLCKAGFVRHHDLKRHLRI-HEN- 497
Query: 102 KMPRDKICEICASSFTSSKMLKAH 125
R +CE C F L H
Sbjct: 498 --GRPYVCE-CLKRFNRLDALNRH 518
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 42.7 bits (96), Expect = 3e-05
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 112 CASSFTSSKMLKAHIRTHTGERPYVCPVCEATFAHSGTLYNHKRLMH 158
C SFT + L+ H RTH + + C C FA S L H + MH
Sbjct: 33 CPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMH 79
Score = 33.5 bits (73), Expect = 0.016
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 67 AHLGGATEHKC--PRCDKIFATAHHKRRHMRLKHESKKMPRDKICEICASSFTSSKMLKA 124
AH G C P C K F H RRH R HE+ K C C +F S +L
Sbjct: 18 AHRLGDPRFYCTYPDCPKSFTRKEHLRRHER-THENVKA---FSCSFCNRAFARSDVLNR 73
Query: 125 HIR 127
H++
Sbjct: 74 HVQ 76
Score = 33.1 bits (72), Expect = 0.021
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 11 GGQESYCV--DCGKFFCNKYSLAVHLREHSEHVGKRYECDDCGLKYYTRRSIVRHITSAH 68
G YC DC K F K L H R H E+V K + C C + + RH+ H
Sbjct: 22 GDPRFYCTYPDCPKSFTRKEHLRRHERTH-ENV-KAFSCSFCNRAFARSDVLNRHVQQMH 79
Query: 69 L 69
L
Sbjct: 80 L 80
Score = 26.2 bits (55), Expect = 2.4
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 35 REHSEHVGK-RYECD--DCGLKYYTRRSIVRHITSAHLGGATEHKCPRCDKIFATAHHKR 91
R + +G R+ C DC K +TR+ +R H C C++ FA +
Sbjct: 15 RSRAHRLGDPRFYCTYPDCP-KSFTRKEHLRRHERTH-ENVKAFSCSFCNRAFARSDVLN 72
Query: 92 RHMRLKHESKK 102
RH++ H K+
Sbjct: 73 RHVQQMHLQKQ 83
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 42.7 bits (96), Expect = 3e-05
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 108 ICEICASSFTSSKMLKAHIRTHTGERPYVC------PV-CEATFAHSGTLYNHKRLMH 158
+CE C +F + LK HIR+HT E+P+ C P C F+ L H++ +H
Sbjct: 71 VCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIH 128
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 41.5 bits (93), Expect = 6e-05
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 109 CEICASSFTSSKMLKAHIRTHTGERPYVCPV--CEATFAHSGTLYNHKRLMHG 159
C C F+ LK H +HTGERP+VC C F + H+R+ HG
Sbjct: 470 CTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRI-HG 521
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 40.3 bits (90), Expect = 1e-04
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 109 CEICASSFTSSKMLKAHIRTHTGERPYVC--PVCEATFAHSGTLYNHKRLMHGRAL 162
C C F + HIR+HTGE+P+ C P C+ F L H R +AL
Sbjct: 6 CPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTHLRKAL 61
Score = 38.3 bits (85), Expect = 6e-04
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 75 HKCPRCDKIFATAHHKRRHMRLKHESKKMPRDKICEICASSFTSSKMLKAHIRTH 129
++CP C ++F H+ RH+R H +K P + C FT L H+RTH
Sbjct: 4 YECPFCKRVFHRQEHQVRHIR-SHTGEK-PFECSYPSCKKRFTRRDELIRHVRTH 56
Score = 31.9 bits (69), Expect = 0.049
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 43 KRYECDDCGLKYYTRRSIVRHITSAHLGGAT-EHKCPRCDKIFATAHHKRRHMR 95
K YEC C ++ + VRHI S H G E P C K F RH+R
Sbjct: 2 KSYECPFCKRVFHRQEHQVRHIRS-HTGEKPFECSYPSCKKRFTRRDELIRHVR 54
Score = 27.1 bits (57), Expect = 1.4
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 14 ESY-CVDCGKFFCNKYSLAVHLREHSEHVGKRYECD--DCGLKYYTRRSIVRHITSAHL 69
+SY C C + F + H+R H+ K +EC C ++ R ++RH+ + HL
Sbjct: 2 KSYECPFCKRVFHRQEHQVRHIRSHTGE--KPFECSYPSCKKRFTRRDELIRHVRT-HL 57
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 35.9 bits (79), Expect = 0.003
Identities = 16/50 (32%), Positives = 20/50 (40%)
Query: 109 CEICASSFTSSKMLKAHIRTHTGERPYVCPVCEATFAHSGTLYNHKRLMH 158
C+ CA FT + L H H+ P CP CE L H + H
Sbjct: 33 CDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFH 82
Score = 27.9 bits (59), Expect = 0.80
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 26 NKYSLAVHLREHSEHVGKR-YECDDCGLKYYTRRSIVRHITSAHLGGATEHKCPRCDKIF 84
N S L E S KR + CD C ++ ++ RH + H A CP C+
Sbjct: 11 NVLSAKRKLTEPSLIDSKRVFPCDQCAKRFTRHENLTRH-KACH-SKAEPIPCPYCEIKC 68
Query: 85 ATAHHKRRHMRLKHESKKM 103
+RH++ H K +
Sbjct: 69 KRKDLLKRHIQRFHNDKSV 87
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 30.3 bits (65), Expect = 0.15
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 9 GDGGQE--SYCVDCGKFFCNKYSLAVHLREHSEHVGKRYECDDCGLK 53
G+G QE S C++CGK K L V + E V +EC CG K
Sbjct: 28 GNGVQEVESLCMECGKNGTTKLLLTV-IPYFREVVLMSFECPHCGFK 73
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 30.3 bits (65), Expect = 0.15
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 16 YCVDC-GKFFCNKYSLAVHLREHSEHVGKRYECDDCGL 52
YC +C G+++CNK L S Y CDDCG+
Sbjct: 199 YCKNCMGRYYCNKCKLWDDDPNKSS-----YHCDDCGI 231
>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 119
Score = 27.9 bits (59), Expect = 0.80
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 27 KYSLAVHLREHSEHVGKRYECDDCGLKYYTRRSIVRHITSAHLGGATEHKCPRCDKIFAT 86
K+S+ + E +C CG + T ++ + SA G ++CPRC F+T
Sbjct: 60 KHSIVQVESQKEEAATIEEKCPKCGNDHMTFHTL--QLRSADEGSTVFYECPRCAYKFST 117
>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 27.5 bits (58), Expect = 1.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 72 ATEHKCPRCDKIFATAHHKRRHMRL 96
A++++CPRCD F H RL
Sbjct: 16 ASKYRCPRCDSRFCCLECNLEHKRL 40
>SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 124
Score = 26.2 bits (55), Expect = 2.4
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 14 ESYCVDCGKFFCNKYSLAVH 33
+ YC++C ++F + +L VH
Sbjct: 55 QHYCIECARYFDSSQALLVH 74
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 25.4 bits (53), Expect = 4.3
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 9/116 (7%)
Query: 43 KRYECD--DCGLKYYTRRSIVRHITSAHLGGATEHKCPRCDKIFATAHHKRRHMRLKHES 100
KR +C D GLK + S V + + + K + H K+R + +
Sbjct: 2 KRGKCKEKDNGLKRISSESEVWNFLDVTVSELNKQKRSPGQTVSKRLHKKQRVV--SNPD 59
Query: 101 KKMPRDKICEICASSFTSSKMLKAHIRTHTG-ERPYVCPVCEATFAHSGTLYNHKR 155
+P + +I + +SK +H TG ER C +A+ HS T Y +R
Sbjct: 60 LSLPSSPVKQILRNGLQNSKY-GSH---KTGLERSASCSSIDASANHSSTTYREQR 111
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 5.6
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 76 KCPRCDKIFATAHHKRR---HM-RLKHESK----KMPRDKICEICASSFTSSKMLKAHIR 127
+CP C + + H R H+ LK+ S+ P+ C C F + +
Sbjct: 324 ECPSCSLVLILSTHLARSYHHLFPLKNWSEIPWSANPKSTHCFACQLPFPKPPV--SPFD 381
Query: 128 THTGERPYVCPVCEATFAHSGTLYNHKRL 156
T Y CP C+ F ++ H++L
Sbjct: 382 ESTSSMRYACPSCKNHFCLDCDVFAHEQL 410
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 25.0 bits (52), Expect = 5.6
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 109 CEICASSFTSSKMLKAHIRTHTGERPYVCPVCE 141
CE+C + +K +K + + ++CP+C+
Sbjct: 1187 CELCHEWY-HAKCMKMSKKKLRADEKFICPICD 1218
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 24.2 bits (50), Expect = 9.8
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 104 PRDKICEICASSFTSSKMLKAHIR 127
PRD C CA+SF+S K H++
Sbjct: 207 PRD--CLFCAASFSSFDTCKKHMK 228
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 24.2 bits (50), Expect = 9.8
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 43 KRYECDDCGLKYYTRRSIVRHITSAHL 69
K Y C+ C +Y + H T +HL
Sbjct: 397 KPYRCEVCSKRYKNLNGLKYHRTHSHL 423
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.325 0.135 0.440
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 781,348
Number of Sequences: 5004
Number of extensions: 30345
Number of successful extensions: 172
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 58
length of query: 164
length of database: 2,362,478
effective HSP length: 68
effective length of query: 96
effective length of database: 2,022,206
effective search space: 194131776
effective search space used: 194131776
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 50 (24.2 bits)
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