GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001660-TA|BGIBMGA001660-PA|IPR007087|Zinc finger,
C2H2-type
         (240 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    28   0.074
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    28   0.074
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    27   0.13 
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    27   0.13 
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    25   0.69 
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    25   0.69 

>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 27.9 bits (59), Expect = 0.074
 Identities = 8/23 (34%), Positives = 17/23 (73%)

Query: 154 KKSYKCQKCIISYDHAINLDRHL 176
           +K Y+C+ C++ +  + NL+RH+
Sbjct: 103 EKPYECKLCLLRFSQSGNLNRHM 125



 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/29 (24%), Positives = 16/29 (55%)

Query: 154 KKSYKCQKCIISYDHAINLDRHLTLSHNE 182
           ++ Y+C+ C  ++  +  L +HL +   E
Sbjct: 75  ERPYRCRLCKKAFSDSSTLTKHLRIHSGE 103


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 0.074
 Identities = 8/23 (34%), Positives = 17/23 (73%)

Query: 154 KKSYKCQKCIISYDHAINLDRHL 176
           +K Y+C+ C++ +  + NL+RH+
Sbjct: 359 EKPYECKLCLLRFSQSGNLNRHM 381



 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/29 (24%), Positives = 16/29 (55%)

Query: 154 KKSYKCQKCIISYDHAINLDRHLTLSHNE 182
           ++ Y+C+ C  ++  +  L +HL +   E
Sbjct: 331 ERPYRCRLCKKAFSDSSTLTKHLRIHSGE 359


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 157 YKCQKCIISYDHAINLDRHLTLSHNEVALRLDQGVSLFSSVAIANYRRRHVGLGCS 212
           Y  Q C ++  H  N    + + HNE+ +  ++  ++FS   +     + VG+ CS
Sbjct: 201 YIKQVCKLNNGHYKNFLSQVEIIHNEILVTHNEIQTIFSVPLLMKIASQFVGIFCS 256


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 157 YKCQKCIISYDHAINLDRHLTLSHNEVALRLDQGVSLFSSVAIANYRRRHVGLGCS 212
           Y  Q C ++  H  N    + + HNE+ +  ++  ++FS   +     + VG+ CS
Sbjct: 26  YIKQVCKLNNGHYKNFLSQVEIIHNEILVTHNEIQTIFSVPLLMKIASQFVGIFCS 81


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 154 KKSYKCQKCIISYDHAINLDRHLTLSHNEVALRLDQGVSLFSSVAIANYRR 204
           +K ++CQ+C   +    +L  H+ L   E   R +     F  V +AN RR
Sbjct: 7   EKPFECQECHKRFTRDHHLKTHMRLHTGERPYRCEHCDRQF--VQVANLRR 55



 Score = 24.2 bits (50), Expect = 0.91
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 154 KKSYKCQKCIISYDHAINLDRHLTLSHNE 182
           ++ Y+C+ C   +    NL RHL +   E
Sbjct: 35  ERPYRCEHCDRQFVQVANLRRHLRVHTGE 63


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 154 KKSYKCQKCIISYDHAINLDRHLTLSHNEVALRLDQGVSLFSSVAIANYRR 204
           +K ++CQ+C   +    +L  H+ L   E   R +     F  V +AN RR
Sbjct: 160 EKPFECQECHKRFTRDHHLKTHMRLHTGERPYRCEHCDRQF--VQVANLRR 208



 Score = 24.2 bits (50), Expect = 0.91
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 154 KKSYKCQKCIISYDHAINLDRHLTLSHNE 182
           ++ Y+C+ C   +    NL RHL +   E
Sbjct: 188 ERPYRCEHCDRQFVQVANLRRHLRVHTGE 216


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,323
Number of Sequences: 317
Number of extensions: 1826
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 10
length of query: 240
length of database: 114,650
effective HSP length: 55
effective length of query: 185
effective length of database: 97,215
effective search space: 17984775
effective search space used: 17984775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)