GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001660-TA|BGIBMGA001660-PA|IPR007087|Zinc finger,
C2H2-type
         (240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    27   3.2  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    26   4.3  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    25   7.4  
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    25   9.8  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   9.8  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    25   9.8  

>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 80  NDFYNETAEFPEAQGCEEMKEDG 102
           + FYNE   F ++ G EE+ E+G
Sbjct: 609 SSFYNEIERFTKSTGIEEITENG 631


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 155 KSYKCQKCIISYDHAINLDRHLTLSHNEVAL 185
           K Y+C+ C   Y +   L  H T SH +V++
Sbjct: 397 KPYRCEVCSKRYKNLNGLKYHRTHSHLQVSM 427


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 207 VGLGCSDERLSLTPFLTL--LRGRPSRDMQHTDEK 239
           V LGCS+E LS+   L++  +  RP    Q  D +
Sbjct: 943 VELGCSEEMLSIIAMLSVPNIWSRPREKQQEADRQ 977


>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 69  KEVVAENTPEVNDFY--NETAEFPEAQGCEEMKEDGW 103
           +++ A  T E  DF   NE  EFP +    E  +DG+
Sbjct: 119 EKIRASATEETKDFIKLNEVNEFPSSDTSLESNQDGF 155


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 105 LELVGGREEMKKDGWILELVGGIRLMV 131
           LEL+    E+KKD WIL L   I  MV
Sbjct: 828 LELISPFLEIKKDSWILILPPSIVDMV 854


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 60  KIEPEDVEVKEVVAENTPEVNDFYNETAEFPEA 92
           K EPED E    V ENT + N+    + ++ E+
Sbjct: 401 KKEPEDYESISAVDENTNDSNESLPSSHDYSES 433


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 986,799
Number of Sequences: 5004
Number of extensions: 36227
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 90
Number of HSP's gapped (non-prelim): 6
length of query: 240
length of database: 2,362,478
effective HSP length: 71
effective length of query: 169
effective length of database: 2,007,194
effective search space: 339215786
effective search space used: 339215786
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)