Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001660-TA|BGIBMGA001660-PA|IPR007087|Zinc finger,
C2H2-type
(240 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0038 - 7631462-7634428,7635975-7636250 31 0.63
04_04_0794 + 28104725-28104829,28105721-28105762,28106470-281065... 31 0.63
06_03_1218 - 28488661-28488757,28488924-28488988,28489352-284894... 31 1.1
04_01_0137 - 1549562-1550213,1553363-1553896,1554524-1554606 30 1.5
02_02_0170 + 7395480-7395917 30 1.9
08_01_0963 - 9661699-9661760,9662095-9662818,9662860-9663265,966... 29 2.5
08_01_1072 + 10954080-10954851,10954956-10955027,10955108-109551... 29 3.4
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 29 3.4
11_06_0701 + 26407055-26407597,26407794-26409644 29 4.4
11_06_0698 + 26385989-26389090 29 4.4
06_03_1221 - 28514952-28518152 29 4.4
03_05_0200 - 21911260-21911322,21911655-21911705,21911756-219118... 29 4.4
11_06_0707 + 26467214-26470309 28 7.8
02_03_0059 + 14539028-14539100,14539488-14539834 28 7.8
01_05_0211 + 19341747-19341829,19342347-19342542,19342572-19343498 28 7.8
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 31.5 bits (68), Expect = 0.63
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 84 NETAEFPEAQG-CEEMKEDGWNLELVGGREEMKKDGWI 120
N+ FP K+DGWNLE +G EMK+ G I
Sbjct: 739 NDLQGFPVGHSYVNTRKQDGWNLEELGHLSEMKRLGMI 776
>04_04_0794 +
28104725-28104829,28105721-28105762,28106470-28106544,
28106811-28106950,28107036-28107093,28107239-28107241,
28107740-28107849,28108562-28108648,28108773-28108856,
28109212-28109277,28109377-28109488,28109949-28110149
Length = 360
Score = 31.5 bits (68), Expect = 0.63
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 145 RAIRDPRYTKKSYKCQKCIISYDH 168
R I++P TK + C KC++ +DH
Sbjct: 137 RLIQEPPRTKHCHDCDKCVLQFDH 160
>06_03_1218 -
28488661-28488757,28488924-28488988,28489352-28489448,
28489647-28489852,28489853-28490152
Length = 254
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 175 HLTLSHNEVALRLDQGVSLFSSVAIANYRRRHVGLGCSDERLSLTPFLTL 224
HL LSHN ++ L LFSS+A+ + H+ G E S P L+L
Sbjct: 49 HLNLSHNSLSGGLPMDSLLFSSIAVLDVSFNHLD-GPLQELQSSNPSLSL 97
>04_01_0137 - 1549562-1550213,1553363-1553896,1554524-1554606
Length = 422
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 65 DVEVKEVVAENTPEVNDFYNETAEFPEAQGCEEMKEDGW 103
+V VK++V E++ E DF+ E + EA+ +K GW
Sbjct: 113 EVAVKKIVRESSQEHKDFFAEVSTISEAKHKNLVKFFGW 151
>02_02_0170 + 7395480-7395917
Length = 145
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 86 TAEFPEAQGCEEMKEDGW 103
TAE+P A GCEE E GW
Sbjct: 77 TAEWPAAVGCEEGDEAGW 94
>08_01_0963 -
9661699-9661760,9662095-9662818,9662860-9663265,
9663488-9665037
Length = 913
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 82 FYNETAEFPEAQGCEEMKE--DGWNLELVGGREEMKK 116
F N+ FP + G E DGWNL+ +G +M++
Sbjct: 550 FLNDLGGFPISSGSNNNTEIQDGWNLDELGSLSQMRR 586
>08_01_1072 +
10954080-10954851,10954956-10955027,10955108-10955191,
10955285-10955353,10955814-10955916,10956033-10956107,
10956204-10956366,10956502-10956571,10956649-10956735,
10956795-10956836,10956904-10956969,10957201-10957275,
10960149-10960271,10960683-10960966
Length = 694
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 67 EVKEVVAENTPEVNDFYNETAEFPEAQGCEEMKE 100
EVKEVV PE N+ ET E + + EE E
Sbjct: 151 EVKEVVVVEVPETNNLDEETEEEEDEEELEEELE 184
>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 123 LVGGIRLMVIELSDAELGAE-RERAIRDPRYTKKSYKCQKCII 164
L GI + + +D E R+R + D RY+ Y C+KC I
Sbjct: 1888 LGSGIIASLDDFADKESSTNLRDRLVSDERYSMAVYTCKKCKI 1930
>11_06_0701 + 26407055-26407597,26407794-26409644
Length = 797
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 82 FYNETAEFPEAQGCEEMK-EDGWNLELVGGREEMKK 116
F N+ FP + G + K +DGWNLE + ++++
Sbjct: 520 FLNDLEGFPVSGGSDNAKMQDGWNLEELADLSKLRR 555
>11_06_0698 + 26385989-26389090
Length = 1033
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 82 FYNETAEFPEAQGCEEMK-EDGWNLELVGGREEMKKDGWI 120
F N+ FP G + K +DGWNLE + ++++ G I
Sbjct: 662 FLNDLEGFPIGGGNDNTKIQDGWNLEELAHLSQLRQLGMI 701
>06_03_1221 - 28514952-28518152
Length = 1066
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 60 KIEPEDVEVKEVVAENTPEVNDFYNETAEFPEAQGCEEMKEDGWNLELVGGREEMKKDGW 119
+I PE +KE+ + VN F N + F +GC + + G E + GW
Sbjct: 388 QISPEIGNLKELQFFSLT-VNSFVNISGMFWNLKGCTSLTALLVSYNFYG--EALPDAGW 444
Query: 120 ILELVGGIRLMVIE 133
+ + V +RLMV++
Sbjct: 445 VGDHVRSVRLMVMQ 458
>03_05_0200 -
21911260-21911322,21911655-21911705,21911756-21911851,
21911947-21912045,21913213-21913526,21913621-21913696,
21913788-21915136,21915344-21915944
Length = 882
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 57 CEVKIEPEDVEVKEVVAENTPEVNDFYNETAEFP----EAQGCEE 97
CE+K E ED+ E V ++P + F + AE E GC++
Sbjct: 236 CEIKTEDEDIYSDEQVGVSSPGKDSFQDSFAELHREPIEYDGCQQ 280
>11_06_0707 + 26467214-26470309
Length = 1031
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 82 FYNETAEFPEAQGCEEMK-EDGWNLELVGGREEMKKDGWI 120
F N+ FP G + K +DGWNLE + ++++ G I
Sbjct: 662 FLNDLEGFPIGGGNDNTKIQDGWNLEELAYLPQLRQLGMI 701
>02_03_0059 + 14539028-14539100,14539488-14539834
Length = 139
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 107 LVGGREEMKKDGWILELVGGIRL 129
+ G R+E+ GW+LE+ GG R+
Sbjct: 1 MTGCRKELGSQGWLLEVPGGHRI 23
>01_05_0211 + 19341747-19341829,19342347-19342542,19342572-19343498
Length = 401
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 107 LVGGREEMKKDGWILELVGGIRL 129
+ G R+E+ GW+LE+ GG R+
Sbjct: 375 MTGCRKELGSQGWLLEVPGGHRI 397
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.136 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,322,087
Number of Sequences: 37544
Number of extensions: 238949
Number of successful extensions: 501
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 492
Number of HSP's gapped (non-prelim): 16
length of query: 240
length of database: 14,793,348
effective HSP length: 80
effective length of query: 160
effective length of database: 11,789,828
effective search space: 1886372480
effective search space used: 1886372480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)
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