GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001660-TA|BGIBMGA001660-PA|IPR007087|Zinc finger,
C2H2-type
         (240 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    27   0.65 
AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    26   1.1  

>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 26.6 bits (56), Expect = 0.65
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 154 KKSYKCQKCIISYDHAINLDRHLTLSHN 181
           +K YKC +C  ++     L RH+   HN
Sbjct: 380 QKPYKCDQCAQTFRQKQLLKRHMNYYHN 407



 Score = 25.0 bits (52), Expect = 2.0
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 154 KKSYKCQKCIISYDHAINLDRHLTLSHNEVALRLDQGVSLFSSVAIANYRRRHVGLGCSD 213
           +K Y+C+ C  +     +L+ HL L  ++   + DQ    F    +    +RH+    + 
Sbjct: 352 EKCYRCEYCPYASISMRHLESHLLLHTDQKPYKCDQCAQTFRQKQLL---KRHMNYYHNP 408

Query: 214 ERLSLTP 220
           + ++ TP
Sbjct: 409 DYVAPTP 415


>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
           growth factor receptorprotein.
          Length = 1433

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 8/54 (14%)

Query: 59  VKIEPEDVEVKEVVAENTPEVNDFYNETAEFPEAQGCEEMKEDGWNLELVGGRE 112
           +KI+P+ +EV   V     E+  F N  A  P        +    NLE+VGGR+
Sbjct: 350 IKIDPDRLEVFSTV----KEITGFINIQAHHPNFTTLNYFR----NLEVVGGRQ 395


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,340
Number of Sequences: 2123
Number of extensions: 8369
Number of successful extensions: 21
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 4
length of query: 240
length of database: 516,269
effective HSP length: 62
effective length of query: 178
effective length of database: 384,643
effective search space: 68466454
effective search space used: 68466454
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)