Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001660-TA|BGIBMGA001660-PA|IPR007087|Zinc finger,
C2H2-type
(240 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58764-4|AAB00726.2| 216|Caenorhabditis elegans Hypothetical pr... 32 0.42
AC006625-13|ABI18147.1| 273|Caenorhabditis elegans Abnormal che... 31 0.98
AC006625-12|AAK68272.2| 214|Caenorhabditis elegans Abnormal che... 31 0.98
U50300-7|AAC48106.1| 645|Caenorhabditis elegans Hypothetical pr... 30 1.3
S66936-1|AAB28820.1| 360|Caenorhabditis elegans Egl-43 protein. 30 1.3
S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein. 30 1.3
Z66515-3|CAA91352.1| 322|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z66515-2|CAA91353.1| 543|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z49071-4|CAA88877.1| 166|Caenorhabditis elegans Hypothetical pr... 29 2.3
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 29 2.3
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 29 2.3
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ... 29 2.3
U41542-2|AAR30212.1| 623|Caenorhabditis elegans Suppressor of p... 29 3.9
U41542-1|AAR30211.1| 684|Caenorhabditis elegans Suppressor of p... 29 3.9
Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical pr... 28 5.2
AL132948-41|CAD31836.1| 248|Caenorhabditis elegans Hypothetical... 28 5.2
AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical ... 28 6.9
>U58764-4|AAB00726.2| 216|Caenorhabditis elegans Hypothetical
protein M03E7.5 protein.
Length = 216
Score = 31.9 bits (69), Expect = 0.42
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 112 EEMKKDGWILELVGGIRLMVIELSDAELGAERERAIRDPRYTKKSYKCQKCIISYDHAIN 171
+++K D +++ +R M ++ + AE ++A+ R+T + + +D +N
Sbjct: 72 DQLKSDVCLIK--NSLRTMTNRHTNRKKQAEEKKALLKQRFTTNQET--RVNLEFDEELN 127
Query: 172 LDRHLTLSHNEVALRLDQGVSLFSSVAIANY 202
L+ L S N + L QG S+F + Y
Sbjct: 128 LNDKLKYSDNMIDQMLAQGASVFEDLQKQKY 158
>AC006625-13|ABI18147.1| 273|Caenorhabditis elegans Abnormal
chemotaxis protein 1,isoform b protein.
Length = 273
Score = 30.7 bits (66), Expect = 0.98
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 151 RYTKKSYKCQKCIISYDHAINLDRHLTLSHNEVALRLDQGVSLFS-SVAIANYRRRHVG 208
R T K ++CQ C ++ A NL H + E FS S ++ +RR H G
Sbjct: 160 RSTPKPFRCQTCGKAFSQAANLTAHKRIHTGEKPFMCPVCNRPFSQSSSLVTHRRTHTG 218
>AC006625-12|AAK68272.2| 214|Caenorhabditis elegans Abnormal
chemotaxis protein 1,isoform a protein.
Length = 214
Score = 30.7 bits (66), Expect = 0.98
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 151 RYTKKSYKCQKCIISYDHAINLDRHLTLSHNEVALRLDQGVSLFS-SVAIANYRRRHVG 208
R T K ++CQ C ++ A NL H + E FS S ++ +RR H G
Sbjct: 101 RSTPKPFRCQTCGKAFSQAANLTAHKRIHTGEKPFMCPVCNRPFSQSSSLVTHRRTHTG 159
>U50300-7|AAC48106.1| 645|Caenorhabditis elegans Hypothetical
protein R03H4.5 protein.
Length = 645
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 144 ERAIRDPRYTKKSYKCQKC-IISYDHA-INLDRHLTLSHNEVALRLDQGVSL 193
+R +R+ R + KC+KC I H + D++LT N + +D V L
Sbjct: 571 DREMRNVRKRLRMIKCEKCQIFDLSHLFVENDKYLTFDRNSMLSYIDNSVHL 622
>S66936-1|AAB28820.1| 360|Caenorhabditis elegans Egl-43 protein.
Length = 360
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 156 SYKCQKCIISYDHAINLDRHLTLSHNEVA 184
S++CQKC + NLDRHL H + A
Sbjct: 316 SFRCQKCERCFGQQTNLDRHLK-KHEQAA 343
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 154 KKSYKCQKCIISYDHAINLDRHLTLSHNE 182
++ YKCQ C S+ + NL RH+ HN+
Sbjct: 248 EQPYKCQYCERSFSISSNLQRHVRNIHNK 276
>S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein.
Length = 581
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 156 SYKCQKCIISYDHAINLDRHLTLSHNEVA 184
S++CQKC + NLDRHL H + A
Sbjct: 537 SFRCQKCERCFGQQTNLDRHLK-KHEQAA 564
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 154 KKSYKCQKCIISYDHAINLDRHLTLSHNE 182
++ YKCQ C S+ + NL RH+ HN+
Sbjct: 469 EQPYKCQYCERSFSISSNLQRHVRNIHNK 497
>Z66515-3|CAA91352.1| 322|Caenorhabditis elegans Hypothetical
protein R53.3b protein.
Length = 322
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 154 KKSYKCQKCIISYDHAINLDRHLTLSHNE 182
++ YKCQ C S+ + NL RH+ HN+
Sbjct: 248 EQPYKCQYCERSFSISSNLQRHVRNIHNK 276
>Z66515-2|CAA91353.1| 543|Caenorhabditis elegans Hypothetical
protein R53.3a protein.
Length = 543
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 154 KKSYKCQKCIISYDHAINLDRHLTLSHNE 182
++ YKCQ C S+ + NL RH+ HN+
Sbjct: 469 EQPYKCQYCERSFSISSNLQRHVRNIHNK 497
>Z49071-4|CAA88877.1| 166|Caenorhabditis elegans Hypothetical
protein T22C8.5 protein.
Length = 166
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 144 ERAIRDPRYTKKSYK--CQKCIISYDHAINLDRHLTLSHNEVAL 185
++ IR R K Y+ C+ CI + + +L +HLT HN V +
Sbjct: 122 DQLIRHKRTHTKEYRFACKFCIRQFSRSDHLQQHLTSVHNIVVV 165
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 150 PRYTKKSYKCQKCIISYDHAINLDRHLTLSHNEVALRL--DQGVSLFSSVAIANYRRRH 206
P TK S+ C+ C + +++ +H+ + H + L G++ F+ AI N+ + H
Sbjct: 1594 PVVTKASWLCRNCCVVFENQPKYQKHMAI-HGDTCLTCIHCSGIA-FNHTAIQNHMKSH 1650
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 150 PRYTKKSYKCQKCIISYDHAINLDRHLTLSHNEVALRL--DQGVSLFSSVAIANYRRRH 206
P TK S+ C+ C + +++ +H+ + H + L G++ F+ AI N+ + H
Sbjct: 1594 PVVTKASWLCRNCCVVFENQPKYQKHMAI-HGDTCLTCIHCSGIA-FNHTAIQNHMKSH 1650
>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
protein ZC123.3 protein.
Length = 1623
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 151 RYTKKSYKCQKCIISYDHAINLDRHLTLSHNEVALR 186
R + K+ KC KC Y + L+ H+ HN+V ++
Sbjct: 96 RNSSKTLKCPKCNWHYKYQETLEIHMKEKHNDVDVK 131
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 154 KKSYKCQKCIISYDHAINLDRHL-TLSHNEVALRLDQGVS 192
++ Y C C SY A NLD H+ +++H RL + V+
Sbjct: 579 QRIYVCNVCKQSYPQAANLDVHMRSMTHQSRMSRLSELVA 618
>U41542-2|AAR30212.1| 623|Caenorhabditis elegans Suppressor of
presenilin defectprotein 3, isoform b protein.
Length = 623
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 151 RYTKKSYKCQKCIISYDHAINLDRHLTLSHNEV 183
R+ ++ C+ C + H DRHL SH E+
Sbjct: 42 RHAPVTFDCEHCAYTCKHKYAYDRHLLQSHPEL 74
>U41542-1|AAR30211.1| 684|Caenorhabditis elegans Suppressor of
presenilin defectprotein 3, isoform a protein.
Length = 684
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 151 RYTKKSYKCQKCIISYDHAINLDRHLTLSHNEV 183
R+ ++ C+ C + H DRHL SH E+
Sbjct: 42 RHAPVTFDCEHCAYTCKHKYAYDRHLLQSHPEL 74
>Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical
protein F39B2.1 protein.
Length = 564
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 149 DPRYTKKSYKCQKCIISYDHAINLDRHLTLSHNEVALRLDQGVSLFS 195
D + Y C C +Y L RHLT H L++ G S F+
Sbjct: 463 DENFNPSPYTCHLCDRTYTTGFALGRHLTRQHR---LQIPYGFSRFT 506
>AL132948-41|CAD31836.1| 248|Caenorhabditis elegans Hypothetical
protein Y39B6A.46 protein.
Length = 248
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 156 SYKCQKCIISYDHAINLDRHLTLSHNEVALRLDQ 189
S +C+KC S D NL RH +H++ + D+
Sbjct: 212 SIRCEKCEYSSDSEKNLKRHCQRNHSKFSAISDE 245
>AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical
protein Y67H2A.10 protein.
Length = 608
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 149 DPRYTKKSYKCQKCIISYDHAINLDRHLTLSHNEVA 184
+P SYKC C Y + L H+ SH +++
Sbjct: 263 NPATNTTSYKCTYCSKRYKTSSGLSNHMMSSHQKIS 298
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.136 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,489,498
Number of Sequences: 27539
Number of extensions: 208365
Number of successful extensions: 686
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 664
Number of HSP's gapped (non-prelim): 32
length of query: 240
length of database: 12,573,161
effective HSP length: 79
effective length of query: 161
effective length of database: 10,397,580
effective search space: 1674010380
effective search space used: 1674010380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
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