GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001660-TA|BGIBMGA001660-PA|IPR007087|Zinc finger,
C2H2-type
         (240 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    27   0.20 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    25   0.82 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   1.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.8  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 154 KKSYKCQKCIISYDHAINLDRHLTLSHNE 182
           ++ YKC  C  +++H+  L RH+ +   E
Sbjct: 145 ERPYKCDVCERAFEHSGKLHRHMRIHTGE 173



 Score = 23.0 bits (47), Expect = 2.5
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 154 KKSYKCQKCIISYDHAINLDRHLTLSHNEVALRLDQGVSLFS-SVAIANYRRRHVG 208
           +K Y+C+ C  S+    NL  H  +   E   + D     F  S  +  + R H G
Sbjct: 117 EKPYQCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERAFEHSGKLHRHMRIHTG 172


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 152 YTKKSYKCQKCIISYDHAINLDRHLTLSHNEV 183
           +  K +KC+KC  S  +   L+ HL  SH+ V
Sbjct: 12  FGSKPFKCEKCSYSCVNKSMLNSHLK-SHSNV 42


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 154 KKSYKCQKCIISYDHAINLDRHLTLSHNE 182
           +K Y C  C   +    NL RHL +   E
Sbjct: 35  EKPYHCSHCDRQFVQVANLRRHLRVHTGE 63


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 58  EVKIEPEDVEVKEVVAENTPEVND 81
           E+K E ED+E  ++  E +  +ND
Sbjct: 291 EIKKEVEDMEYDDIKTELSTGMND 314


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,566
Number of Sequences: 429
Number of extensions: 2680
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 240
length of database: 140,377
effective HSP length: 56
effective length of query: 184
effective length of database: 116,353
effective search space: 21408952
effective search space used: 21408952
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)