GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001660-TA|BGIBMGA001660-PA|IPR007087|Zinc finger,
C2H2-type
         (240 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16270.1 68415.m01863 expressed protein  and genefinder; expr...    31   0.92 
At2g25730.1 68415.m03084 expressed protein                             30   1.6  
At1g76770.1 68414.m08934 heat shock protein-related contains sim...    29   3.7  
At5g18700.1 68418.m02219 protein kinase-related contains protein...    28   4.9  
At5g55820.1 68418.m06956 expressed protein                             27   8.6  
At4g28760.2 68417.m04113 expressed protein predicted protein. Ar...    27   8.6  
At4g28760.1 68417.m04112 expressed protein predicted protein. Ar...    27   8.6  
At4g20095.1 68417.m02939 hypothetical protein contains Pfam prof...    27   8.6  

>At2g16270.1 68415.m01863 expressed protein  and genefinder;
           expression supported by MPSS
          Length = 759

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 62  EPEDVEVKEVVAENTPEVNDFYNETAEFPEAQGCEEMKEDGWNLELVGGREEMKKDGWIL 121
           E E    +EVV E   E  D     AE  E   CE ++E    +    G  + K  GW L
Sbjct: 260 EQEKDGAEEVVVEE--ETEDVEQSEAESDEEMVCESVEETTSQVPKQSGSRKFKFLGWFL 317

Query: 122 ELVGGIRLM 130
            L  G  L+
Sbjct: 318 ALALGYLLV 326



 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/52 (30%), Positives = 23/52 (44%)

Query: 59  VKIEPEDVEVKEVVAENTPEVNDFYNETAEFPEAQGCEEMKEDGWNLELVGG 110
           V+ E EDVE  E  ++           T++ P+  G  + K  GW L L  G
Sbjct: 271 VEEETEDVEQSEAESDEEMVCESVEETTSQVPKQSGSRKFKFLGWFLALALG 322


>At2g25730.1 68415.m03084 expressed protein 
          Length = 2464

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 123  LVGGIRLMVIELSDAELGAE--RERAIRDPRYTKKSYKCQKCII 164
            L  GI   + +++D +L +E  R+R I D RY+   Y C+KC I
Sbjct: 1890 LGSGISTSLDDIAD-QLSSECLRDRLISDERYSMAVYMCKKCKI 1932


>At1g76770.1 68414.m08934 heat shock protein-related contains
           similarity to 17.9 kDa heat-shock protein [Helianthus
           annuus] gi|11990130|emb|CAB55634
          Length = 244

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 8/60 (13%)

Query: 58  EVKIEPEDVEVKEVVAENTPEVNDFYNETAEFPEAQGCEEMKEDGWNLELVGGREEMKKD 117
           E K EPE+ E+KE   E  PE     NE AE P+ +  EE+ E+G   +  G +EE  +D
Sbjct: 156 EEKTEPEE-EIKE---ETKPEEE---NEEAEEPQREEEEEVVEEG-TRDHEGKKEEEIED 207


>At5g18700.1 68418.m02219 protein kinase-related contains protein
           kinase domain, INTERPRO:IPR000719
          Length = 1366

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 69  KEVVAENTPEVNDFYNETAEFPEAQGCEE 97
           + VV+ N P+ N   NET    EA+ C E
Sbjct: 436 QRVVSSNVPDENSSANETPTLGEARDCHE 464


>At5g55820.1 68418.m06956 expressed protein
          Length = 1826

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 167 DHAINLDRHLTLSHNEVALRLDQGVSLFSSVAIANYR 203
           DH + L + +T + +EV++  D G S+F S  IA  R
Sbjct: 481 DHEVELPQAITTT-SEVSMVTDAGTSIFQSEIIARSR 516


>At4g28760.2 68417.m04113 expressed protein predicted protein.
           Arabidopsis thaliana
          Length = 924

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 62  EPEDVEVKEVVAENTPEVND 81
           EPEDVE KEV  E T +V +
Sbjct: 365 EPEDVETKEVAKEITRQVRE 384


>At4g28760.1 68417.m04112 expressed protein predicted protein.
           Arabidopsis thaliana
          Length = 924

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 62  EPEDVEVKEVVAENTPEVND 81
           EPEDVE KEV  E T +V +
Sbjct: 365 EPEDVETKEVAKEITRQVRE 384


>At4g20095.1 68417.m02939 hypothetical protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 249

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 96  EEMKEDGWNLELVGGREEMKKDGWILE--LVGGIRLMVIELSDAELGAERE 144
           EE    GWN +LV    +     W+ E  L G  +L   E+ D+EL  E+E
Sbjct: 113 EEDTYFGWNKDLVDDFFKGGMPEWMPEDALTGRDKLQYYEMKDSELEEEKE 163


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,220,221
Number of Sequences: 28952
Number of extensions: 199084
Number of successful extensions: 549
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 543
Number of HSP's gapped (non-prelim): 9
length of query: 240
length of database: 12,070,560
effective HSP length: 79
effective length of query: 161
effective length of database: 9,783,352
effective search space: 1575119672
effective search space used: 1575119672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)