Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001659-TA|BGIBMGA001659-PA|IPR007087|Zinc finger,
C2H2-type
(157 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g16320.1 68417.m02474 expressed protein ; expression supporte... 30 0.83
At2g23740.1 68415.m02834 zinc finger (C2H2 type) family protein ... 29 1.1
At5g15480.1 68418.m01812 zinc finger (C2H2 type) family protein ... 27 4.4
At4g19940.1 68417.m02921 F-box family protein contains Pfam PF00... 27 4.4
At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein ... 27 4.4
At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein ... 27 4.4
At1g16220.1 68414.m01942 protein phosphatase 2C family protein /... 27 4.4
At5g52570.1 68418.m06528 beta-carotene hydroxylase, putative sim... 27 5.8
At4g02800.1 68417.m00380 expressed protein similar to A. thalian... 27 5.8
At2g46495.1 68415.m05788 zinc finger (C3HC4-type RING finger) fa... 27 5.8
At2g33700.1 68415.m04130 protein phosphatase 2C, putative / PP2C... 27 5.8
At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein ... 27 5.8
>At4g16320.1 68417.m02474 expressed protein ; expression supported
by MPSS
Length = 279
Score = 29.9 bits (64), Expect = 0.83
Identities = 17/69 (24%), Positives = 33/69 (47%)
Query: 2 VDFENGKSSPNDTDVKVESDSSDLETALPLSQIKEKKRKNAVRGMCAIKKTKTEMTSDAS 61
+D + KS T KV ++D+E A+ ++Q + KRKN + +++ +
Sbjct: 173 IDRDVYKSIMKKTATKVMQHTTDVEKAMAVTQFLDSKRKNKLVEDALLRRRLFALYVFLL 232
Query: 62 PYMDESYVG 70
P + +VG
Sbjct: 233 PIFTDGFVG 241
>At2g23740.1 68415.m02834 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 907
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 100 YKCEDCIVGYNKDVFLKRHLRERHIKR--ENADVIVCEICKSTFNDKRSYVPH 150
+ C C+ + + L+ H+ ERH + E ++ C C S F DK + H
Sbjct: 496 FACAICLDSFVRRKLLEIHVEERHHVQFAEKCMLLQCIPCGSHFGDKEQLLVH 548
>At5g15480.1 68418.m01812 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 402
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 97 RLPYKCEDCIVGYNKDVFLKRHLRERHIKRENADVIVCEICKSTFNDKRSYVPHHRR 153
++ ++CE+C G+ + + K H H+ VCE T + +V +R
Sbjct: 61 KILFRCEECGKGFRYEKYFKNHRSMMHLSPNEK---VCEESLMTLSRSLGFVKKKKR 114
>At4g19940.1 68417.m02921 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain;similar to F-box protein Fbx8
(GI:6164735) [Homo
sapiens]|8737673|gb|AV566223.1|AV566223
Length = 411
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 9 SSPNDTDVKVESDSSDLETALPLSQIKEKKRKNAVRG-MCAIKKTKTEM 56
SSP D+D+ + S D + +P +K + + RG MC +KK+ ++
Sbjct: 104 SSPPDSDITMSSSVIDQDLTMP--GMKGYQISHVFRGLMCLVKKSSAQI 150
>At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 419
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 129 ADVIVCEICKSTFNDKRSYVPHHRRH 154
+D VCEIC F ++ H RRH
Sbjct: 67 SDRYVCEICNQGFQRDQNLQMHRRRH 92
>At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 362
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 129 ADVIVCEICKSTFNDKRSYVPHHRRH 154
+D VCEIC F ++ H RRH
Sbjct: 36 SDRYVCEICNQGFQRDQNLQMHRRRH 61
>At1g16220.1 68414.m01942 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2C;
PP2C (GI:3643088) [Mesembryanthemum crystallinum];
contains Pfam PF00481 : Protein phosphatase 2C domain;
Length = 491
Score = 27.5 bits (58), Expect = 4.4
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 9 SSPNDTDVKVESDSSDLETALPLSQIKEKKRKNAVRGMCAIKKTKTEMTSDASPYMDESY 68
+S D D K E+ + ET +P+ +IKE+K + C I+ KT + S DE +
Sbjct: 405 TSSKDADKKEEASTETNET-VPVWEIKEEKTPES----CRIESKKTTLAECISVKDDEEW 459
>At5g52570.1 68418.m06528 beta-carotene hydroxylase, putative
similar to GI:1575296, beta-carotene hydroxylase
Length = 303
Score = 27.1 bits (57), Expect = 5.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 5 ENGKSSPNDTDVKVESDSSDLETALPLSQIKEKKRKNAVR 44
E +SSP D D K ES +S E + +K+ ++K + R
Sbjct: 54 ERKQSSPMDDDNKPESTTSSSEILMTSRLLKKAEKKKSER 93
>At4g02800.1 68417.m00380 expressed protein similar to A. thaliana
hypothetical protein T6B20.12 (1946366)
Length = 333
Score = 27.1 bits (57), Expect = 5.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 7 GKSSPNDTDVKVESDSSDLETALPLSQIKEKKRKNAVRGMCA 48
GK +++DV+ DSS+ E P + KK KN M A
Sbjct: 149 GKKRKHESDVEQTEDSSNEEEKRPKERKIMKKAKNIAISMAA 190
>At2g46495.1 68415.m05788 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 878
Score = 27.1 bits (57), Expect = 5.8
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 114 FLKRHLRERHIKRENADVIVCEICKSTFNDKRSYVPH 150
+ K L E N D IVC IC S + K + PH
Sbjct: 300 YKKTELGESRRLPGNNDDIVCPICLSEYASKETVRPH 336
>At2g33700.1 68415.m04130 protein phosphatase 2C, putative / PP2C,
putative contains PF00481: Protein phosphatase 2C
domain; similar to protein phosphatase-2C (PP2C)
(GI:3643085) [Mesembryanthemum crystallinum]
Length = 380
Score = 27.1 bits (57), Expect = 5.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 128 NADVIVCEICKSTFNDKRSYVPHHR 152
NADV VC + + +DK ++P +R
Sbjct: 60 NADVDVCNLVMKSLDDKSEFLPVYR 84
>At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 439
Score = 27.1 bits (57), Expect = 5.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 129 ADVIVCEICKSTFNDKRSYVPHHRRH 154
+D +CEIC F ++ H RRH
Sbjct: 64 SDRYICEICNQGFQRDQNLQMHRRRH 89
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.133 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,490,548
Number of Sequences: 28952
Number of extensions: 122130
Number of successful extensions: 479
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 468
Number of HSP's gapped (non-prelim): 15
length of query: 157
length of database: 12,070,560
effective HSP length: 75
effective length of query: 82
effective length of database: 9,899,160
effective search space: 811731120
effective search space used: 811731120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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