GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001659-TA|BGIBMGA001659-PA|IPR007087|Zinc finger,
C2H2-type
         (157 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    31   0.005
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    31   0.005
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    30   0.011
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    28   0.042
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    27   0.098
L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    21   3.7  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   3.7  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   6.4  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    20   8.5  

>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 31.1 bits (67), Expect = 0.005
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 99  PYKCEDCIVGYNKDVFLKRHLRERHIKRENADVIVCEICKSTFNDKRSYVPHHRRH 154
           PY+C DC   +++   L  H+R    ++       C +C   F+   S   H R H
Sbjct: 21  PYRCIDCNKSFSQAANLTAHVRTHSGEKP----FRCPVCDRRFSQSSSVTTHMRTH 72



 Score = 29.5 bits (63), Expect = 0.014
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 99  PYKCEDCIVGYNKDVFLKRHLRERHIKRENADVIVCEICKSTFNDKRSYVPHHRRH 154
           P++C  C   +++   +  H+R    +R       C +CK  F+D  +   H R H
Sbjct: 49  PFRCPVCDRRFSQSSSVTTHMRTHSGERPYR----CRLCKKAFSDSSTLTKHLRIH 100



 Score = 25.8 bits (54), Expect = 0.17
 Identities = 8/22 (36%), Positives = 16/22 (72%)

Query: 99  PYKCEDCIVGYNKDVFLKRHLR 120
           PY+C+ C++ +++   L RH+R
Sbjct: 105 PYECKLCLLRFSQSGNLNRHMR 126


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 31.1 bits (67), Expect = 0.005
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 99  PYKCEDCIVGYNKDVFLKRHLRERHIKRENADVIVCEICKSTFNDKRSYVPHHRRH 154
           PY+C DC   +++   L  H+R    ++       C +C   F+   S   H R H
Sbjct: 277 PYRCIDCNKSFSQAANLTAHVRTHSGEKP----FRCPVCDRRFSQSSSVTTHMRTH 328



 Score = 29.5 bits (63), Expect = 0.014
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 99  PYKCEDCIVGYNKDVFLKRHLRERHIKRENADVIVCEICKSTFNDKRSYVPHHRRH 154
           P++C  C   +++   +  H+R    +R       C +CK  F+D  +   H R H
Sbjct: 305 PFRCPVCDRRFSQSSSVTTHMRTHSGERPYR----CRLCKKAFSDSSTLTKHLRIH 356



 Score = 25.8 bits (54), Expect = 0.17
 Identities = 8/22 (36%), Positives = 16/22 (72%)

Query: 99  PYKCEDCIVGYNKDVFLKRHLR 120
           PY+C+ C++ +++   L RH+R
Sbjct: 361 PYECKLCLLRFSQSGNLNRHMR 382



 Score = 20.6 bits (41), Expect = 6.4
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 4/39 (10%)

Query: 120 RERH----IKRENADVIVCEICKSTFNDKRSYVPHHRRH 154
           R RH    ++ +N    VC IC  ++    +   H R H
Sbjct: 234 RRRHSINLLEEDNQKPNVCRICGKSYARPSTLKTHLRTH 272


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 29.9 bits (64), Expect = 0.011
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 99  PYKCEDCIVGYNKDVFLKRHLRERHIKRENADVIVCEICKSTFNDKRSYVPHHR 152
           PY CE C + ++    LK H+    +   N     C+ C+  F  +R ++ HH+
Sbjct: 218 PYGCEHCSMKFSDSNQLKAHV----LIHTNEKPFECDKCRGRFR-RRHHLVHHK 266



 Score = 27.9 bits (59), Expect = 0.042
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 99  PYKCEDCIVGYNKDVFLKRHLRERHIKRENADVIVCEICKSTFNDKRSYVPHHRRH 154
           P++C++C   + +D  LK H+R    +R       CE C   F    +   H R H
Sbjct: 162 PFECQECHKRFTRDHHLKTHMRLHTGERPYR----CEHCDRQFVQVANLRRHLRVH 213



 Score = 23.0 bits (47), Expect = 1.2
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 134 CEICKSTFNDKRSYVPHHRRH 154
           CE+C  +F  K     H R H
Sbjct: 137 CEVCNRSFGYKHVLQNHERTH 157


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 27.9 bits (59), Expect = 0.042
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 99  PYKCEDCIVGYNKDVFLKRHLRERHIKRENADVIVCEICKSTFNDKRSYVPHHRRH 154
           P++C++C   + +D  LK H+R    +R       CE C   F    +   H R H
Sbjct: 9   PFECQECHKRFTRDHHLKTHMRLHTGERPYR----CEHCDRQFVQVANLRRHLRVH 60


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 26.6 bits (56), Expect = 0.098
 Identities = 14/56 (25%), Positives = 21/56 (37%)

Query: 99  PYKCEDCIVGYNKDVFLKRHLRERHIKRENADVIVCEICKSTFNDKRSYVPHHRRH 154
           P+KC+ C   +     LK H+     K     +  C +C   F +      H R H
Sbjct: 162 PFKCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRLH 217



 Score = 21.0 bits (42), Expect = 4.9
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 123 HIKRENADVIVCEICKSTFNDKRSYVPHHRRH 154
           +I+ + +D   C IC    + K +   H+R H
Sbjct: 126 NIEHKLSDPNQCVICHRVLSCKSALQMHYRTH 157


>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 98  LPYKCEDCIVGYNKDVFLKRHLR 120
           LP KC  C   +++   L+ H+R
Sbjct: 6   LPCKCTICPKAFSRPWLLQGHIR 28


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 2   VDFENGKSSPNDTDVKVESDSSDLETALPLSQIKEKKRK 40
           V  E  ++   DT  +VES +S+L+  +PL +I E +++
Sbjct: 156 VQEERQRTKDRDTS-EVES-TSNLQADMPLERIIEAEKR 192


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 131  VIVCEICKSTFNDKRSYV 148
            V VC+ C ST  +K   V
Sbjct: 1373 VAVCDACYSTIEEKNLQV 1390


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 6/22 (27%), Positives = 10/22 (45%)

Query: 133 VCEICKSTFNDKRSYVPHHRRH 154
           +C+ C   F    + + H R H
Sbjct: 81  ICKYCNRQFTKSYNLLIHERTH 102


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.133    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,318
Number of Sequences: 317
Number of extensions: 1270
Number of successful extensions: 23
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of query: 157
length of database: 114,650
effective HSP length: 52
effective length of query: 105
effective length of database: 98,166
effective search space: 10307430
effective search space used: 10307430
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
S2: 40 (20.2 bits)