Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001659-TA|BGIBMGA001659-PA|IPR007087|Zinc finger,
C2H2-type
(157 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0155 - 15185985-15186755,15187049-15187236,15187479-151875... 34 0.061
08_02_0584 - 19010345-19010656,19010959-19011018 29 1.7
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 28 4.0
09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361 27 5.3
08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413 27 5.3
03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447 27 5.3
01_06_1193 - 35306608-35306777,35306869-35306890,35306988-353069... 27 5.3
12_02_0550 + 20328666-20328870,20329116-20329200,20329285-203293... 27 7.0
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 27 7.0
>09_04_0155 -
15185985-15186755,15187049-15187236,15187479-15187517,
15187741-15187768
Length = 341
Score = 33.9 bits (74), Expect = 0.061
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 100 YKCEDCIVGYNKDVFLKRHLR-ERHIKRENADVIVCEICKSTFNDKRSYVPH 150
Y C+ C V + L HL ++H+K+EN + CEICK N ++ H
Sbjct: 269 YSCKVCSVKCTFERMLAYHLTGKKHLKQENLQ-LSCEICKLQCNSEKVLSDH 319
>08_02_0584 - 19010345-19010656,19010959-19011018
Length = 123
Score = 29.1 bits (62), Expect = 1.7
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 3 DFENGKSSPNDTDVKVESDSSDLETALPLSQIKEKKRKNAVRGMCAIKKTKTEMTSDAS 61
D E+ K + + + K + + + E A P + KEKK K +G KK K E T+D +
Sbjct: 19 DKEHAKEAKPEKEKKEKKEKNGEEAAKPAKEKKEKKEKKE-KGK--EKKEKVEETTDVA 74
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 13 DTDVKVESDSSDLETALPLSQIKEKKRK 40
D DV E D+ D+ A+ LS ++E++RK
Sbjct: 473 DLDVPSEFDNEDIARAISLSLLEEEQRK 500
>09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361
Length = 504
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 129 ADVIVCEICKSTFNDKRSYVPHHRRH 154
+D VCEIC F ++ H RRH
Sbjct: 63 SDRYVCEICNQGFQRDQNLQMHRRRH 88
>08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413
Length = 533
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 129 ADVIVCEICKSTFNDKRSYVPHHRRH 154
+D VCEIC F ++ H RRH
Sbjct: 62 SDRYVCEICNQGFQRDQNLQMHRRRH 87
>03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447
Length = 420
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 129 ADVIVCEICKSTFNDKRSYVPHHRRH 154
+D VCEIC F +++ H RRH
Sbjct: 28 SDRYVCEICGQGFQREQNLQMHRRRH 53
>01_06_1193 -
35306608-35306777,35306869-35306890,35306988-35306996,
35307107-35307115,35307470-35307491,35307981-35308784,
35308861-35309088,35309250-35309335,35309449-35309530,
35309630-35309778,35309992-35310105,35310961-35311059,
35311243-35311321,35311873-35312021
Length = 673
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 8 KSSPNDTDVKVESDSSDLETALPLSQIKEKKRKNAVRGMCAIKKTKTEMTSDAS 61
++ P D + D ++ +A P+S ++E++ + A +K K+ MTSD S
Sbjct: 287 EAPPADNVEAPKEDPAEKPSAPPISTLEEEEEEEDEFTRLAQRKNKSVMTSDDS 340
>12_02_0550 +
20328666-20328870,20329116-20329200,20329285-20329389,
20331435-20331468,20331552-20331737
Length = 204
Score = 27.1 bits (57), Expect = 7.0
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 3/99 (3%)
Query: 36 EKKRKNAVRGMCAIKKTKTEMTSDASPYMDESYVGKXXXXXXXXXXXXXXXXXXXXXXNY 95
EK N V C ++ E T + Y+D + + + +
Sbjct: 85 EKMDVNFVGAWCLLQYMDAEKTKQSIEYLDPTRICQTQHTVTLSLNSKVNGRYRVNPEDL 144
Query: 96 LRLPYKC---EDCIVGYNKDVFLKRHLRERHIKRENADV 131
R+ ++ + I +D++L H R HIKR D+
Sbjct: 145 PRIEHRTNFDDTSITNVQRDLYLFIHRRRYHIKRRFFDL 183
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 100 YKCEDCIVGYNKDVFLKRHLRERHIKR--ENADVIVCEICKSTF 141
Y C C+ + L+RH++E+H + + + ++ C C S F
Sbjct: 497 YSCAVCMDSFTNRRVLERHVQEKHGAQYLQYSTLLRCISCNSNF 540
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.133 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,996,747
Number of Sequences: 37544
Number of extensions: 131652
Number of successful extensions: 382
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 13
length of query: 157
length of database: 14,793,348
effective HSP length: 76
effective length of query: 81
effective length of database: 11,940,004
effective search space: 967140324
effective search space used: 967140324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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