Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001658-TA|BGIBMGA001658-PA|IPR007087|Zinc finger,
C2H2-type
(259 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 52 6e-08
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 39 8e-04
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 36 0.006
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 36 0.008
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 35 0.014
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 33 0.031
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 33 0.055
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 32 0.072
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 32 0.095
SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni... 31 0.13
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 31 0.22
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 29 0.51
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot... 29 0.89
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 28 1.2
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 28 1.6
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 27 2.1
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 27 2.1
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 27 2.7
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 27 3.6
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3... 25 8.3
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 52.4 bits (120), Expect = 6e-08
Identities = 41/171 (23%), Positives = 66/171 (38%), Gaps = 15/171 (8%)
Query: 52 CTQVFKAHSEYLYHQKNHHTRYICVVCGKRYRGLE-SCVVHYNTEHGSDRTSIPTKEYCC 110
C + F H + H HT + C Y+ E ++ +R Y C
Sbjct: 120 CDECFSKHQQLRSHISACHTHLLPYPC--TYQDCELRFATKQKLQNHVNRAHEKIISYSC 177
Query: 111 ANTEC--YFTTSKKSAYTKHVASHKPKPECGICYKQFAN----NHTLTLHIRKVHDKKNR 164
+ C + K S H+ P C IC +QF H + LH + ++K
Sbjct: 178 PHESCVGHEGFEKWSQLQNHIREAHV-PSCSICGRQFKTAAHLRHHVVLHQTTLEERK-- 234
Query: 165 TFKCQL--CGNEYKSRGGLKHHTSSTHDV-IKYYCPQCGKEFNSKYTLRNH 212
T+ C + C + LK H S H+ + ++C CG +F K+ L+ H
Sbjct: 235 TYHCPMEGCKKSFTRSSALKKHISVIHEGNMAFHCDSCGTKFGYKHMLQRH 285
Score = 43.2 bits (97), Expect = 4e-05
Identities = 47/202 (23%), Positives = 77/202 (38%), Gaps = 31/202 (15%)
Query: 42 KKHFERHNRICTQV--FKAH---SEYLYHQKNHHTRYICVVCGKR-----YRGLESCVV- 90
K H + H R T V F H + ++ + H R+I V + + G + C
Sbjct: 67 KSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFSK 126
Query: 91 HYNTEHGSDRTSIPTKEYCCANTECY--FTTSKK------SAYTKHVASHKPKPECGICY 142
H Y C +C F T +K A+ K ++ P C + +
Sbjct: 127 HQQLRSHISACHTHLLPYPCTYQDCELRFATKQKLQNHVNRAHEKIISYSCPHESC-VGH 185
Query: 143 KQFANNHTLTLHIRKVHDKKNRTFKCQLCGNEYKSRGGLKHHT----SSTHDVIKYYCPQ 198
+ F L HIR+ H C +CG ++K+ L+HH ++ + Y+CP
Sbjct: 186 EGFEKWSQLQNHIREAHVPS-----CSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPM 240
Query: 199 --CGKEFNSKYTLRNHAKHLHQ 218
C K F L+ H +H+
Sbjct: 241 EGCKKSFTRSSALKKHISVIHE 262
Score = 38.3 bits (85), Expect = 0.001
Identities = 40/151 (26%), Positives = 60/151 (39%), Gaps = 20/151 (13%)
Query: 106 KEYCCANTECYFTTSKKSAYTKHVASHK-PKP-ECGI--CYKQFANNHTLTLHIRKVHDK 161
K + C EC S+ S +H+ +H +P C C K F L +H ++ H
Sbjct: 21 KIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIH-KRCHTN 79
Query: 162 KNRTFKCQL--CGNEYKSRGGLKHHTSSTHDVIKYYCPQ--CGKEFNSKYTLRNH--AKH 215
+ F C C ++ ++ L+ H Y C C + F+ LR+H A H
Sbjct: 80 V-KPFSCHYDGCDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQQLRSHISACH 138
Query: 216 LH--------QDTEKRFMLKSYLRTHIEMQH 238
H QD E RF K L+ H+ H
Sbjct: 139 THLLPYPCTYQDCELRFATKQKLQNHVNRAH 169
Score = 36.3 bits (80), Expect = 0.004
Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 7/156 (4%)
Query: 56 FKAHSEYLYHQKNHHTRYICVVCGKRYRGLESCVVHYNTEHGSDRTSIPTKEYCCANTEC 115
F+ S+ H + H C +CG++++ + + H+ H + T K Y C C
Sbjct: 188 FEKWSQLQNHIREAHVPS-CSICGRQFK-TAAHLRHHVVLHQT--TLEERKTYHCPMEGC 243
Query: 116 YFTTSKKSAYTKHVAS-HKPKP--ECGICYKQFANNHTLTLHIRKVHDKKNRTFKCQLCG 172
+ ++ SA KH++ H+ C C +F H L H+ + KK CG
Sbjct: 244 KKSFTRSSALKKHISVIHEGNMAFHCDSCGTKFGYKHMLQRHLERGTCKKAHKPYINECG 303
Query: 173 NEYKSRGGLKHHTSSTHDVIKYYCPQCGKEFNSKYT 208
++ G+ H ++ K+ ++ T
Sbjct: 304 IKHDGIEGVAIHDQKEKELSSNLVSDVAKKIINEVT 339
Score = 26.6 bits (56), Expect = 3.6
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 18/119 (15%)
Query: 23 NLLYKCDDCVIGWNNENVYKKHFERHNRICTQVFKAHSEYLYHQKNHHTRYICV-VCGKR 81
N+ + CD C + +++ ++H ER C KAH Y+ H V + ++
Sbjct: 264 NMAFHCDSCGTKFGYKHMLQRHLERGT--CK---KAHKPYINECGIKHDGIEGVAIHDQK 318
Query: 82 YRGLES--------CVVHYNTEHGSDRTSIPTKEYCCANTECYFTTSKKSAYTKHVASH 132
+ L S +++ T HG +EY C+ EC + + +H+ SH
Sbjct: 319 EKELSSNLVSDVAKKIINEVTGHGYKE----AREYSCSFPECNYRFKRLYDMHRHLNSH 373
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 38.7 bits (86), Expect = 8e-04
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 164 RTFKCQLCGNEYKSRGGLKHHTSSTHDVIKYYCPQCGKEFNSKYTLRNHAKHLHQDTEKR 223
++F C C ++K L+ H S H K + CGK F+ + LR H + LH + R
Sbjct: 421 KSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVCICGKRFSRRDNLRQH-ERLHVNASPR 479
Score = 35.1 bits (77), Expect = 0.010
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 138 CGICYKQFANNHTLTLHIRKVHDKKNRTFKCQLCGNEYKSRGGLKHH 184
C C K+F + L HIR +H + + F C +CG + R L+ H
Sbjct: 425 CPECSKKFKRSEHLRRHIRSLHTSE-KPFVC-ICGKRFSRRDNLRQH 469
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 35.9 bits (79), Expect = 0.006
Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 7/112 (6%)
Query: 81 RYRGLESCVVHYNTEHGSDRTSIPTKE---YCCANTECYFTTSKKSAYTKHVASHKP-KP 136
R R L S V + + S + +K Y C C ++ H+ +H +P
Sbjct: 540 RSRSLNSLVGNKSENSSSSKAKSESKSQGNYVCTFAGCNKRFTRAYNLKSHMNTHTNYRP 599
Query: 137 -ECGICYKQFANNHTLTLHIRKVHDKKNRTFKCQLCGNEYKSRGGLKHHTSS 187
+C IC K FA H H ++H + F C C + L H S
Sbjct: 600 FQCSICKKSFARQHDKRRH-EQLH-TGIKAFACVTCNQRFARMDALNRHYKS 649
Score = 32.3 bits (70), Expect = 0.072
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 141 CYKQFANNHTLTLHIRKVHDKKNRTFKCQLCGNEYKSRGGLKHHTSSTHDVIKYYCPQCG 200
C K+F + L H+ H R F+C +C + + + H + + C C
Sbjct: 577 CNKRFTRAYNLKSHMN-THTNY-RPFQCSICKKSFARQHDKRRHEQLHTGIKAFACVTCN 634
Query: 201 KEFNSKYTLRNHAK 214
+ F L H K
Sbjct: 635 QRFARMDALNRHYK 648
Score = 29.1 bits (62), Expect = 0.67
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 51 ICTQVFKAHSEYLYHQKNHH--TRYICVVCGKRYRGLESCVVHYNTEHGSD 99
IC + F + H++ H + CV C +R+ +++ HY +E G +
Sbjct: 604 ICKKSFARQHDKRRHEQLHTGIKAFACVTCNQRFARMDALNRHYKSEVGQN 654
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 35.5 bits (78), Expect = 0.008
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 162 KNRTFKCQLCGNEYKSRGGLKHHTSSTH 189
+N+ ++C++C YK+ GLK+H + +H
Sbjct: 395 ENKPYRCEVCSKRYKNLNGLKYHRTHSH 422
Score = 31.1 bits (67), Expect = 0.17
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 26 YKCD--DCVIGWNNENVYKKHFERHNRICTQVFKAHSEYLYHQKN--HHTRYICVVCGKR 81
YKC +C + N+N K H + H C+ + + HQ + Y C VC KR
Sbjct: 350 YKCPVPNCDKAYKNQNGLKYH-KLHGH-CSPITTPTPAPIPHQGFVVENKPYRCEVCSKR 407
Query: 82 YRGLESCVVHYNTEH 96
Y+ L H H
Sbjct: 408 YKNLNGLKYHRTHSH 422
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 163 NRTFKCQL--CGNEYKSRGGLKHHTSSTH 189
++ +KC + C YK++ GLK+H H
Sbjct: 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGH 375
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 34.7 bits (76), Expect = 0.014
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 107 EYCCANTECYFTTSKKSAYTKHVASH-KPKP-ECGICYKQFANNHTLTLHIRKVHDKKNR 164
+Y C C ++K H+ +H +P C +C F +H L H+R +H+ R
Sbjct: 442 KYVCLYNGCNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLR-IHE-NGR 499
Query: 165 TFKCQLCGNEYKSRGGLKHH 184
+ C+ C + L H
Sbjct: 500 PYVCE-CLKRFNRLDALNRH 518
Score = 34.7 bits (76), Expect = 0.014
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 141 CYKQFANNHTLTLHIRKVHDKKNRTFKCQLCGNEYKSRGGLKHHTSSTHDVIKYYCPQCG 200
C K+ A + + HI+ H +R ++C LC + LK H + Y C +C
Sbjct: 450 CNKRIARKYNVESHIQ-TH-LSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVC-ECL 506
Query: 201 KEFNSKYTLRNH 212
K FN L H
Sbjct: 507 KRFNRLDALNRH 518
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 33.5 bits (73), Expect = 0.031
Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 23 NLLYKCDDCVIGWNNENVYKKHFERHNRICTQVFKAHSEYLYHQKNHHTRYICVVCGKR 81
N ++CD C + + ++ H ++++ T V H Y++ ++N + R+ C VCG++
Sbjct: 136 NATFRCDKCDMMFVKQSGLTNHKRTYHQVETVVIIGHRRYVW-RRNENGRFQC-VCGRQ 192
Score = 29.5 bits (63), Expect = 0.51
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 148 NHTLTLHIRKVHDKKNRTFKCQLCGNEYKSRGGLKHHTSSTHDV 191
N T + K + N TF+C C + + GL +H + H V
Sbjct: 121 NGTSVANASKQPNMPNATFRCDKCDMMFVKQSGLTNHKRTYHQV 164
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 32.7 bits (71), Expect = 0.055
Identities = 29/143 (20%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 25 LYKCDDCVIGWNNENVYKKHFERHNRICTQVFKAHSEYLYHQKNHHTRYICVVCGKRYRG 84
L+ +D GW + + E++ + K + ++K ++C++C K YR
Sbjct: 208 LHMREDYKAGWQLDREWDSVQEKYKKGA----KLEEGMVKNEKKEDIPFVCLICKKDYRS 263
Query: 85 --LESCVVHYNTEHGSDR-TSIPTKEYCCANTECYFTTSKKSAYTKHVASHKPKPECGIC 141
+C H+ + R PT C A+T+ F+ K + + + + K K + +
Sbjct: 264 PIATTCGHHFCEQCAITRYRKTPTCIQCGADTKGLFSVDKN--FDRLLKNRKSKNDEAVK 321
Query: 142 YK--QFANNHTLTLHIRKVHDKK 162
K F +N++ T + + D++
Sbjct: 322 QKVGGFESNNSATTEVSERKDRE 344
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 32.3 bits (70), Expect = 0.072
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 140 ICYKQFANNHTLTLHIRKVHDKKNRTFKCQLCGNE--YKSRGGLKHHTSSTH 189
IC F+ + L H +H K F+C++CG++ + L H H
Sbjct: 584 ICNTVFSRTYDLIRHQDTIHAKTRPVFRCEICGDQRHFSRHDALVRHLRVKH 635
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 31.9 bits (69), Expect = 0.095
Identities = 14/56 (25%), Positives = 19/56 (33%)
Query: 164 RTFKCQLCGNEYKSRGGLKHHTSSTHDVIKYYCPQCGKEFNSKYTLRNHAKHLHQD 219
R F C C + L H + CP C + K L+ H + H D
Sbjct: 29 RVFPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFHND 84
>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 119
Score = 31.5 bits (68), Expect = 0.13
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 167 KCQLCGNEYKSRGGLKHHTSSTHDVIKYYCPQCGKEFNS 205
KC CGN++ + L+ ++ + Y CP+C +F++
Sbjct: 79 KCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFST 117
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 30.7 bits (66), Expect = 0.22
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 163 NRTFKCQLCGNEYKSRGGLKHHTSSTHDVIKYYCPQ--CGKEFNSKYTLRNHAK 214
N ++C C + LK HT S + C CGK FN + +R H +
Sbjct: 465 NVRYRCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQR 518
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
Query: 4 TKEAVDRERDEKRSSETYMNLLYKCDDCVIGWNNENVYKKHFERHN---------RICTQ 54
T + + S+ + N+ Y+C +C+ G++ + K H H C +
Sbjct: 446 TSRKIAQSHTGSSSTSSAANVRYRCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGK 505
Query: 55 VFKAHSEYLYHQKNH 69
F S HQ+ H
Sbjct: 506 AFNVRSNMRRHQRIH 520
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 29.5 bits (63), Expect = 0.51
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 161 KKNRTFKCQLCGNEYKSRGGLKHHTSSTHDVIKYYCPQ-------CGKEFNSKYTLRNHA 213
+K + + C+ C + LK H S + + C + CG++F+ + L H
Sbjct: 65 QKVKQYVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQ 124
Query: 214 KHLHQDTEKR 223
+ +H++ + R
Sbjct: 125 QKIHRNPQPR 134
>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
Sin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 28.7 bits (61), Expect = 0.89
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 1/93 (1%)
Query: 112 NTECYFTTSKKSAYTKHVASHKPKPECGICYKQFANNHTLTLHIRKVHDKKNRTFKCQLC 171
N C+ ++ YT VA + N TL L +KV DKK T +
Sbjct: 470 NQVCWMKQLERFKYTLRVAGSDTVLPLDKTFSSLDGNPTLELVKKKVRDKKGSTQQLPTS 529
Query: 172 GNEYKSRGGLKHHT-SSTHDVIKYYCPQCGKEF 203
+ G +K SST++ +EF
Sbjct: 530 SPQNSVYGSIKKDAQSSTYNATDIMSSNTYQEF 562
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 28.3 bits (60), Expect = 1.2
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 118 TTSKKSAYTKHVASHKPKPECGICYKQFANNHTLTLHIRKVHDKKNRTFKCQLCGNEYKS 177
TT K S TK+ + +P +C +C K F T HIR +K C +
Sbjct: 9 TTGKPSRSTKNPDAPRPY-KCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSR 67
Query: 178 RGGLKHH 184
L H
Sbjct: 68 SDELTRH 74
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 108 YCCANTECYFTTSKKSAYTKHVASHKPKPE--CGICYKQFANNHTLTLHIRKVHDKKN 163
Y C C + ++K +H SH C C F + L H+ + H K+N
Sbjct: 17 YKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKHVKQN 74
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 166 FKC--QLCGNEYKSRGGLKHHTSSTHDVIKYYCPQCGKEFNSKYTLRNHAKHLH 217
+KC Q C + + + H S + + CP C F L H H
Sbjct: 17 YKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKH 70
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 193 KYYC--PQCGKEFNSKYTLRNHAKHLHQDTEK---RFMLKSYLRTHIEMQHLHIEHGCRE 247
++YC P C K F K LR H + H++ + F +++ R+ + +H+ H ++
Sbjct: 25 RFYCTYPDCPKSFTRKEHLRRH-ERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQKQ 83
Query: 248 CLKVR 252
L R
Sbjct: 84 NLSER 88
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 37 NENVYKKHFERHNRICTQVFKAHSEYLYHQKNHHTRY 73
+EN Y+K+ E HN I +++ Y + +H Y
Sbjct: 83 DENEYRKYLESHNGISNAYTASNNTNYYFEVSHDALY 119
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 205 SKYTLRNHAKHLHQDTEKRFMLKSYLRTHIEMQHLHIEHGCRE 247
SK R H +H +K L Y+R +IE+ EH C E
Sbjct: 573 SKKLKRTHT--VHDKCQKVAKLDHYIRDNIELNSKEREHDCYE 613
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 129 VASHKPKPECGICYKQFANNHTLTLHIRKVHDKKNRTFKC-QLCGNE----YKSRGGLKH 183
+ K P+C C F ++ L H R+ H+ R + C Q+ G +K+ L+
Sbjct: 238 ITGFKGHPKCEFCNTHFYDDDELFKHCREKHE---RCYICDQVAGRPTHQYFKNYDSLER 294
Query: 184 HTSSTHDVIK 193
H H + +
Sbjct: 295 HFEKDHYICR 304
>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 334
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 47 RHNRICTQVFKAHSEYLYHQKNHHTRYICVVCGKRYRG 84
R IC+ F + Y +K RY+C+ C K + G
Sbjct: 196 REALICSHCFHHNGLASYGEKASDVRYVCLFC-KAWNG 232
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.133 0.431
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,346,713
Number of Sequences: 5004
Number of extensions: 60903
Number of successful extensions: 218
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 42
length of query: 259
length of database: 2,362,478
effective HSP length: 71
effective length of query: 188
effective length of database: 2,007,194
effective search space: 377352472
effective search space used: 377352472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)
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