Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001657-TA|BGIBMGA001657-PA|IPR007087|Zinc finger,
C2H2-type, IPR011526|Helix-turn-helix, Psq-like,
IPR009057|Homeodomain-like, IPR007889|Helix-turn-helix, Psq
(1427 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 50 2e-06
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 36 0.031
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 34 0.16
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 32 0.50
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 31 0.88
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc... 31 0.88
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 31 1.5
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 31 1.5
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 30 2.0
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 30 2.0
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 30 2.7
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 30 2.7
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 29 3.5
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 29 6.2
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 29 6.2
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 29 6.2
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 28 8.2
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 50.0 bits (114), Expect = 2e-06
Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 22/174 (12%)
Query: 203 LPYKCDL--CVVGFATETIYQGHIQKHHNKNKNGFSCDICDSVLNSIPILXXXXXXXXXX 260
LPY C C + FAT+ Q H+ + H K + +SC V +
Sbjct: 142 LPYPCTYQDCELRFATKQKLQNHVNRAHEKIIS-YSCPHESCVGHE-----------GFE 189
Query: 261 XXXXXXXXXXKHNKPTCDLCGNIFVTNSSLKIHMLTKHKPT---PVTYNC--ELCAKVYK 315
+ + P+C +CG F T + L+ H++ H+ T TY+C E C K +
Sbjct: 190 KWSQLQNHIREAHVPSCSICGRQFKTAAHLRHHVVL-HQTTLEERKTYHCPMEGCKKSFT 248
Query: 316 SKSGLHSHNSSAHGGGAQYH--TCRTHYRSHRALMHHLKTHSAHRDTSEYKFEC 367
S L H S H G +H +C T + L HL+ + + Y EC
Sbjct: 249 RSSALKKHISVIHEGNMAFHCDSCGTKFGYKHMLQRHLERGTCKKAHKPYINEC 302
Score = 44.4 bits (100), Expect = 1e-04
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 6/124 (4%)
Query: 280 CGNIFVTNSSLKIHMLTKHKPTPVTYNCELCAKVYKSKSGLHSH---NSSAHGGGAQYHT 336
CG + S L+ H+ T P + C+K + KS L H +++ Y
Sbjct: 30 CGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDG 89
Query: 337 CRTHYRSHRALMHHLKTHSAHRDTSEYKFECADCEGKFANKQSLRSHIEWEHLLMRHHRC 396
C + + + L H++ H R Y C+ F+ Q LRSHI H + + C
Sbjct: 90 CDAQFYTQQHLERHIEVH---RKPKPYACTWEGCDECFSKHQQLRSHISACHTHLLPYPC 146
Query: 397 VKCD 400
D
Sbjct: 147 TYQD 150
Score = 43.6 bits (98), Expect = 2e-04
Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 7/125 (5%)
Query: 277 CDL--CGNIFVTNSSLKIHMLTKHKPTPVTYNCELCAKVYKSKSGLHSH---NSSAHGGG 331
CD C F S LKIH P + + + C + ++ L H +
Sbjct: 55 CDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEVHRKPKPYA 114
Query: 332 AQYHTCRTHYRSHRALMHHLKTHSAHRDTSEYKFECADCEGKFANKQSLRSHIEWEHLLM 391
+ C + H+ L H+ + H Y DCE +FA KQ L++H+ H +
Sbjct: 115 CTWEGCDECFSKHQQLRSHIS--ACHTHLLPYPCTYQDCELRFATKQKLQNHVNRAHEKI 172
Query: 392 RHHRC 396
+ C
Sbjct: 173 ISYSC 177
Score = 41.5 bits (93), Expect = 8e-04
Identities = 30/118 (25%), Positives = 44/118 (37%), Gaps = 8/118 (6%)
Query: 278 DLCGNIFVTNSSLKIHMLTKHKPTPVTYNCELCAKVYKSKSGLHSHNSSAHGG----GAQ 333
D C F T L+ H+ KP P E C + + L SH S+ H
Sbjct: 88 DGCDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQQLRSHISACHTHLLPYPCT 147
Query: 334 YHTCRTHYRSHRALMHHLKTHSAHRDTSEYKFECADCEGK--FANKQSLRSHIEWEHL 389
Y C + + + L +H+ + AH Y C G F L++HI H+
Sbjct: 148 YQDCELRFATKQKLQNHV--NRAHEKIISYSCPHESCVGHEGFEKWSQLQNHIREAHV 203
Score = 33.1 bits (72), Expect = 0.29
Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 288 SSLKIHMLTKHKPTPVTYNCELCAKVYKSKSGLHSH---NSSAHGGGAQYHTCRTHYRSH 344
S L+ H+ H P+ C +C + +K+ + L H + + YH +
Sbjct: 192 SQLQNHIREAHVPS-----CSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKS 246
Query: 345 RALMHHLKTHSAHRDTSEYKFECADCEGKFANKQSLRSHIE 385
LK H + F C C KF K L+ H+E
Sbjct: 247 FTRSSALKKHISVIHEGNMAFHCDSCGTKFGYKHMLQRHLE 287
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 36.3 bits (80), Expect = 0.031
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 8/126 (6%)
Query: 278 DLCGNIFVTNSSLKIHMLTKH-KPTPVTYNCELCAKVYKSKSGLHSHNSSAHGGGA-QYH 335
+L G I NS ++ ++ +P + N + K S S S + G +
Sbjct: 516 ELLGKIENDNSKSNDYLSVRNTRPRSRSLNSLVGNKSENSSSSKAKSESKSQGNYVCTFA 575
Query: 336 TCRTHYRSHRALMHHLKTHSAHRDTSEYKFECADCEGKFANKQSLRSHIEWEHLLMRHHR 395
C + L H+ TH+ +R F+C+ C+ FA + R H E H ++
Sbjct: 576 GCNKRFTRAYNLKSHMNTHTNYRP-----FQCSICKKSFARQHDKRRH-EQLHTGIKAFA 629
Query: 396 CVKCDK 401
CV C++
Sbjct: 630 CVTCNQ 635
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 33.9 bits (74), Expect = 0.16
Identities = 37/133 (27%), Positives = 49/133 (36%), Gaps = 34/133 (25%)
Query: 290 LKIHMLTKHKPTPVTYNCELCAKVYK---------SKSGLHSHNSSAHGG------GAQY 334
LK+H KH + C+LC K K SK GL HN G G +
Sbjct: 188 LKLHAKVKHHK----FFCDLCVKNKKVFTHEHTLFSKKGLTKHNEVGDQGSDLEITGFKG 243
Query: 335 HT----CRTHYRSHRALMHHLKTHSAHRDTSEYKFECADCEGK-----FANKQSLRSHIE 385
H C TH+ L H R+ E + C G+ F N SL H E
Sbjct: 244 HPKCEFCNTHFYDDDELFKHC------REKHERCYICDQVAGRPTHQYFKNYDSLERHFE 297
Query: 386 WEHLLMRHHRCVK 398
+H + R C++
Sbjct: 298 KDHYICRERECLE 310
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 32.3 bits (70), Expect = 0.50
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 305 YNCELCAKVYKSKSGLHSHNSSAH 328
Y CE+C+K YK+ +GL H + +H
Sbjct: 399 YRCEVCSKRYKNLNGLKYHRTHSH 422
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 31.5 bits (68), Expect = 0.88
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 204 PYKCDLCVVGFATETIYQGHIQKHHN 229
PY+CDLC GF + H++ H N
Sbjct: 472 PYRCDLCKAGFVRHHDLKRHLRIHEN 497
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 277 CDLCGNIFVTNSSLKIHMLTKHKPTPVTYNCELCAKVYKSKSGLHSH 323
CDLC FV + LK H+ P Y CE C K + L+ H
Sbjct: 475 CDLCKAGFVRHHDLKRHLRIHENGRP--YVCE-CLKRFNRLDALNRH 518
>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 290
Score = 31.5 bits (68), Expect = 0.88
Identities = 33/171 (19%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 1237 QMSLTNSLHLYNKFSPNDKLNLYDFRLKILEKLLPNPNDVNRRNVLKMKHELTKIEKVRS 1296
Q+ L S F+ +D ++ F+ L +LLP P N+ + + + ++ +
Sbjct: 53 QVDLQKSSFNDKTFNESDVISNERFKSNDLLELLPAPK--NQAELAPKSSKRSDLDLNEN 110
Query: 1297 VIMAKKR--SCPARGTRKYGKKTRYTEETLKKALDDIKSCKMSQRVASETYNIPRSTLKY 1354
++ + G+ + KK+ Y+E++ +L +I + Q ++ P +
Sbjct: 111 YLLPNNSVSDLTSTGSSETVKKSTYSEKSGNVSLFNIVGSESKQASLVDSDQKPYQPILI 170
Query: 1355 KLKNQHSKPVGKPPALLAEEEEISNHIIALSDNGVPISMQDVRVIFKNYLD 1405
K K + PP L + E N I+++++ V + +D+ +I ++Y++
Sbjct: 171 KPKAR-----ANPPKLRNQPE---NDFISIANHSVHSNAEDINIINEDYIE 213
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 322 SHNSSAHGGGAQYHTCRTHYRSHRALMHHLKTHSAHRDTSEYKFECADCEGKFANKQSLR 381
S+ S H + H R H S + H + S + ++ C +C F+ SL+
Sbjct: 426 SNYSDHHNNDKRAHVSRRHSTSRKIAQSHTGSSSTS-SAANVRYRCTECLQGFSRPSSLK 484
Query: 382 SH 383
H
Sbjct: 485 IH 486
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 273 NKPTCDLCGNIFVTNSSLKIHMLTKHKPTPVTYNCELCA--KVYKSKSGLHSHNSSAHG 329
N+ T ++C +F L H T H T + CE+C + + L H HG
Sbjct: 578 NRVTGEICNTVFSRTYDLIRHQDTIHAKTRPVFRCEICGDQRHFSRHDALVRHLRVKHG 636
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 355 SAHRDTSEYKFECADCEGKFANKQSLRSHIEWEHLLMRHHRCVKCDKVPVRNGTLR 410
S R F C +C KF + LR HI H + C+ C K R LR
Sbjct: 413 SVPRSPGGKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVCI-CGKRFSRRDNLR 467
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 695 VPPAQPSSSSTSKRGLCESDGSPVIPCKRFRPKFGHVPSTRDKSAQPRLS 744
VPPA S+S TS+ L +S + P +P + S+RD S +P ++
Sbjct: 233 VPPAHGSTSMTSRSKLDDSTDNSSKPRTSLQPGESPMKSSRDISRKPSMA 282
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 29.9 bits (64), Expect = 2.7
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 909 VRETNLNAAR--VASSENVKQTSRIKSWKDVTRDELLTFIGLLLHTGTIRLNRISDYWKR 966
+R +N AR + + T +K+W DV L++FI L+ DY
Sbjct: 182 IRCAGVNEARSFLRKVQTTDITEWVKNWTDVAAGFLISFISSFLNADIYSF--ADDYTYL 239
Query: 967 HHLFNAPCFGQFMSRNRFLLILRCLHFSSESS 998
LF + +S FL LR + FS +SS
Sbjct: 240 LKLFGRLLAEELVSPKHFL--LRIVSFSGDSS 269
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1379
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 1318 RYTEETLKKALDDIKSCKMSQRVASETYNIPRSTLKYKLKNQHSKPVGKPPALLAEEEEI 1377
+YT+ + DD S K SQ +P LK+KL++ P LLA ++
Sbjct: 1093 QYTDSDMS---DDENSLKDSQSSVLSFSAVPTKVLKFKLRDVLGSEYSPSPQLLASSSDV 1149
Query: 1378 S 1378
S
Sbjct: 1150 S 1150
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 29.5 bits (63), Expect = 3.5
Identities = 21/112 (18%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
Query: 1281 VLKMKHELTKIEKVRSVIMAKKRSCPARGTRKYGKKTRYTEETLKKALDDIKSCKMSQRV 1340
+ K+ + E + ++ + + P R + K G ++ T +++ S + V
Sbjct: 128 IANRKNNEKEDEFMAEILGSIDQDIPERLSTKKGNRSHTTSNAKRRSQKAASSISTTNVV 187
Query: 1341 ASETYNIPRSTLKYKLKNQHSKPV-GKPPALLAEEEEISNHIIALSDNGVPI 1391
+S+ T+ + S P+ PPA L EE + + + L + +P+
Sbjct: 188 SSDPKKYIPETVPSTPQPASSLPIPSSPPAALETEENVDSQPMELDEPELPV 239
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 28.7 bits (61), Expect = 6.2
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 960 ISDYWKRHHLFNAPCFGQFM---------SRNRFLLILRCLHFSSESSEEDRLIKIRPFM 1010
+S + R H FN P F +++ RN+ L +H + +L R
Sbjct: 271 LSGKFLRFHRFNIPGFWKYLPTRQKMNVYKRNKRLKFQNYIHIMESDERQSKLKLGRVRA 330
Query: 1011 DHFNNKMNTIYSPGKELSLDES 1032
N NT++ KE S DES
Sbjct: 331 RKTKNNENTMFFDSKEHSTDES 352
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 1210 LQDQMLAYYPVQRKTLRWYKKLFV---HVLQMSLTNSLHLYNKFSPNDKLNLYDFRLKIL 1266
+ D+ + +P KT+ W KK V ++++ S+T S + FS +L F ++L
Sbjct: 62 IADENVRIFPPLHKTIDWAKKRNVEEQNLIEQSITESQRI---FSEKQRLEQERFNRELL 118
Query: 1267 EK 1268
EK
Sbjct: 119 EK 120
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 696 PPAQPSSSSTSKRGLCESDGSPVIPCKRFRPKFGHVPSTRDKSAQPRLSP 745
P PSSSSTS RG SP+ F + V + + LSP
Sbjct: 375 PSDSPSSSSTSVRGSVNDSNSPISSSATFAIQSNGVEPVGLSTQEQNLSP 424
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 28.3 bits (60), Expect = 8.2
Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 278 DLCGNIFVTNSSLKIHMLTKHKPTPVTYNCELCAKVYKSKSGLHSHNSSAHGGGAQYHTC 337
+L +I +N + K H+ T+ +PTP EL + + S +A + + TC
Sbjct: 167 ELATSIPQSNEASKSHLFTQ-EPTPEEIEAELARRSSQRLSPRDCLFCAA--SFSSFDTC 223
Query: 338 RTHYRSHRALM----HHLKTHSAHRDTSEYK----FECADCEGKFANKQSLRSHIE 385
+ H ++ +L +L + D K F C C +F + +++R+H++
Sbjct: 224 KKHMKASHSLYIPEREYLVDEPSLFDYLAEKISIGFTCLTCNREFKSLEAVRAHMQ 279
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,263,289
Number of Sequences: 5004
Number of extensions: 262222
Number of successful extensions: 757
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 729
Number of HSP's gapped (non-prelim): 38
length of query: 1427
length of database: 2,362,478
effective HSP length: 82
effective length of query: 1345
effective length of database: 1,952,150
effective search space: 2625641750
effective search space used: 2625641750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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