Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001657-TA|BGIBMGA001657-PA|IPR007087|Zinc finger,
C2H2-type, IPR011526|Helix-turn-helix, Psq-like,
IPR009057|Homeodomain-like, IPR007889|Helix-turn-helix, Psq
(1427 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 49 3e-05
03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524 37 0.14
01_06_1412 - 37140654-37141088,37141549-37142214 36 0.31
01_01_0990 + 7847066-7847478,7847713-7848679 36 0.31
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 35 0.55
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 34 0.72
03_06_0026 - 31118997-31119113,31119700-31119900,31120032-311202... 33 1.3
08_02_1446 + 27156449-27156790,27157961-27158042,27158698-271587... 33 1.7
05_03_0281 + 11560402-11560569,11561373-11561579,11562966-115631... 33 2.2
10_08_0249 + 16172811-16172987,16174048-16174299,16174426-161745... 31 5.1
08_01_0576 - 5114636-5115151,5115254-5116183,5116898-5117614,511... 31 5.1
09_04_0312 - 16589892-16590333,16590988-16591024,16592027-165921... 31 6.7
06_03_1229 + 28571131-28571235,28572108-28572656,28572749-285729... 31 6.7
04_04_0588 - 26412487-26413887 31 8.9
01_04_0049 - 15422996-15423407,15423954-15424114 31 8.9
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 48.8 bits (111), Expect = 3e-05
Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 10/129 (7%)
Query: 280 CGNIFVTNSSLKIHMLTKHKPTPVTYNC--ELCAKVYKSKSGLHSHNSSAHGGGAQYHTC 337
C +F S +K H + K V C C K + + L +HN + H QY C
Sbjct: 161 CNKVFKYASKMKKHEESHVKLDYVEVVCCEPGCMKTFTNVECLRAHNQACH----QYVQC 216
Query: 338 RTHYRSH--RALMHHLKTHSAHRDTSEYKFECADCEGKFANKQSLRSHIEWEHLLMRHHR 395
H + + HL+ H T K CE F+NK +L HI+ H ++
Sbjct: 217 DICGEKHLKKNIKRHLRAHEEVPSTERIKCSFEGCECSFSNKSNLTKHIKASHDQVKPFA 276
Query: 396 C--VKCDKV 402
C C+KV
Sbjct: 277 CRFTGCEKV 285
>03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524
Length = 651
Score = 36.7 bits (81), Expect = 0.14
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 12/102 (11%)
Query: 305 YNCEL--CAKVYKSKSGLHSHNSSAHGGGAQYHTCRTHYRSHRALMHHLKTHSAHRDTSE 362
+ CE+ C +K+++ L H + +C H+RSH+ L H S H D
Sbjct: 540 FQCEIDYCRMTFKNRAELSVHKKNT----CTVKSCGRHFRSHKYLRRH---QSIHNDDMP 592
Query: 363 YKFECADCEGKFANKQSLRSHIEWEHLLMRHHRCVK--CDKV 402
YK C F H + H R ++C C K+
Sbjct: 593 YKCPWEGCSMAFKWSWDRGEHFQ-VHAGKRPYKCTTPGCSKI 633
>01_06_1412 - 37140654-37141088,37141549-37142214
Length = 366
Score = 35.5 bits (78), Expect = 0.31
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 289 SLKIHMLTKHKPTPVTYNCELCAKVYKSKSGLHSHNSSAHGGGAQYHTCRTHYRSHRALM 348
+L+ H KH P + C CAK + K +H + G + C + ++ R+L
Sbjct: 276 TLQTHYKRKHGAKP--FRCRRCAKPFAVKGDWRTHEKNC--GKRWFCACGSDFKHKRSLN 331
Query: 349 HHLKTHSAH 357
H+++ AH
Sbjct: 332 DHVRSFGAH 340
>01_01_0990 + 7847066-7847478,7847713-7848679
Length = 459
Score = 35.5 bits (78), Expect = 0.31
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 18/126 (14%)
Query: 273 NKPTCDLCGNIFVTNSSLKIHMLTKHKPTPVTYNC--ELCAKVY--KSKSGLHSHNSSAH 328
N+ C++CG F + +L++H + P + E +VY KS +H + S A
Sbjct: 23 NRFVCEICGKGFQRDQNLQLHRRGHNLPWKLRQRSGKEPRKRVYVCPEKSCVHHNPSRAL 82
Query: 329 GG--GAQYHTCRTHYR--------SHR-ALMHHLKTHSAHRDTSEYKFECADCEGKFANK 377
G G + H CR H S R A+ K HS T EY+ DC F+ +
Sbjct: 83 GDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYR---CDCGTLFSRR 139
Query: 378 QSLRSH 383
S +H
Sbjct: 140 DSFITH 145
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 34.7 bits (76), Expect = 0.55
Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 4/119 (3%)
Query: 280 CGNIFVTNSSLKIHMLTKHK-PTPVTYNCEL-CAKVYKSKSGLHSHNSSAHGGGAQYHTC 337
CG F S L+ H + K CE C K + + L +HN S H C
Sbjct: 360 CGKTFKYASKLQKHEESHVKLDYSEVICCEPGCMKAFTNLECLKAHNKSCHRH-VVCDVC 418
Query: 338 RTHYRSHRALMHHLKTHSAHRDTSEYKFECADCEGKFANKQSLRSHIEWEHLLMRHHRC 396
T + + H + H T + DC+ F+ K +L H++ H R C
Sbjct: 419 GTK-QLKKNFKRHQRMHEGSCVTERVRCHLKDCKLSFSKKSNLDKHVKAVHEQKRPFVC 476
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 34.3 bits (75), Expect = 0.72
Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 15/124 (12%)
Query: 300 PTPVTYNCELCAKVYKSKSGLHSHNSSAHGG-------GAQYHTCRTHYRSHRALMHHLK 352
P+P C++C++ + GL H + H G C + + R L H++
Sbjct: 459 PSP-GLKCKICSQEFSDDQGLGLHWTEVHKKEVRWLFRGYSCAVCMDSFTNRRVLERHVQ 517
Query: 353 T-HSAHRDTSEYKFECADCEGKFANKQSLRSHIEWEHLLMRHHRCVK-CDKVPVRNGTLR 410
H A C C F N L W+H++ H R D VP R
Sbjct: 518 EKHGAQYLQYSTLLRCISCNSNFLNTDLL-----WQHIVSDHSRDFSLLDHVPRRPRGQS 572
Query: 411 LQKT 414
+++T
Sbjct: 573 IKRT 576
>03_06_0026 -
31118997-31119113,31119700-31119900,31120032-31120218,
31120339-31120415,31120738-31120815,31120858-31120974,
31121047-31121175,31121327-31121479,31121589-31122044,
31122122-31122239,31122385-31122575,31123140-31123415,
31123524-31123700,31124040-31124141,31124227-31124459,
31125563-31125764
Length = 937
Score = 33.5 bits (73), Expect = 1.3
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 467 YIDGENFKERAIKIVEMKIEDGCD--VYRENNTESKNKANSDS--VVLDNE-AVDAVGVR 521
++ + KE K+ E + + V E T SK + N DS V +D+E V+A
Sbjct: 473 FVKPKEKKESPAKLKEKLLVKSLEPSVVVEEKTVSKVEINEDSEEVEVDSEEVVEAENED 532
Query: 522 TPNELDKMLVSAPKMPISSLAQSKADTDVAYQYLVNTLSAYHSLIV 567
+ +ELD + S PK+P A+ V + VN ++A HS IV
Sbjct: 533 SEDELDPFVKSDPKLP---RVVRMANLCVVGGHSVNGVAAIHSEIV 575
>08_02_1446 +
27156449-27156790,27157961-27158042,27158698-27158792,
27159421-27159492,27159572-27159651,27159728-27159827,
27160064-27160141,27160408-27160455,27160570-27160638,
27161035-27161175,27161262-27161516
Length = 453
Score = 33.1 bits (72), Expect = 1.7
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 300 PTPVTYNCELCAKVYKSKSGLHSHNSSAH-------GGGAQYHTCRTHYRSHRALMHH 350
P P A + +S H H+ A+ GGG YH + HY+ H HH
Sbjct: 22 PAPSAARLNAAAPEFTPRSAAHHHHHHANPRRQHRGGGGGAYHHHQQHYQPHHHHQHH 79
>05_03_0281 +
11560402-11560569,11561373-11561579,11562966-11563174,
11563261-11563309,11563611-11563673,11563799-11565472
Length = 789
Score = 32.7 bits (71), Expect = 2.2
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 13/63 (20%)
Query: 275 PTCDLCGNIFVTNSSLKIHMLTKHKPTPVTYNCELCAK-------VYKSKSGLHSHNSSA 327
P C+ C + F ++ L HM +H Y+C +C + +++ L HN+
Sbjct: 164 PMCEFCRSSFYGDNELYTHMSREH------YSCHICQRQHPGQYDYFRNYDDLERHNAME 217
Query: 328 HGG 330
HGG
Sbjct: 218 HGG 220
>10_08_0249 + 16172811-16172987,16174048-16174299,16174426-16174505,
16174616-16174701,16174799-16174904,16174987-16175143,
16175220-16175315,16175797-16175845,16175946-16176205,
16176327-16176499,16176692-16176812,16176923-16176975,
16177088-16177217,16177371-16177516,16177887-16178075,
16178317-16178549,16178784-16178932,16179042-16179104
Length = 839
Score = 31.5 bits (68), Expect = 5.1
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 1381 IIALSDNGVPISMQDVRVIFKNYLDDNNKH 1410
I A++DNG+P+S QDV + ++D + +H
Sbjct: 389 ITAIADNGIPLSEQDVLFVRVVWIDTSGQH 418
>08_01_0576 -
5114636-5115151,5115254-5116183,5116898-5117614,
5119630-5119746,5119930-5120295,5121365-5121634
Length = 971
Score = 31.5 bits (68), Expect = 5.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 200 YQKLPYKCDLCVVGFATETIYQGHIQKHHNKNKN 233
YQ LP +C C + F + ++ H+ H KN+N
Sbjct: 823 YQDLPRQCKTCGLRFKCQEEHRAHMDWHVTKNRN 856
>09_04_0312 - 16589892-16590333,16590988-16591024,16592027-16592168,
16592341-16592486,16592561-16592630
Length = 278
Score = 31.1 bits (67), Expect = 6.7
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 1236 LQMSLTNSLHLYNKFSPNDKLNLYDFRLKILEKLLPNPNDVNRRNVLKMKHELTKIEKVR 1295
L SL+N + K +P ++N D L +PN +++ N +K K +I K +
Sbjct: 183 LHSSLSNLVEPLQKITPATRVNKQDEYESFLGSKIPNEINIHPPNDIKSKGRCKRIRKSK 242
Query: 1296 SVIMAKKRSCPARGTRK 1312
KK ++GT K
Sbjct: 243 E----KKAGSGSKGTSK 255
>06_03_1229 +
28571131-28571235,28572108-28572656,28572749-28572918,
28573454-28573669,28573787-28573946
Length = 399
Score = 31.1 bits (67), Expect = 6.7
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 301 TPVTYNCELCAKVYKSKSGLHSH-NSSAH 328
TP+ Y+C LC K Y+S H NS +H
Sbjct: 63 TPMLYSCALCGKEYRSSKAHAQHLNSRSH 91
>04_04_0588 - 26412487-26413887
Length = 466
Score = 30.7 bits (66), Expect = 8.9
Identities = 25/72 (34%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 692 TSRVPPAQPSSSSTSK---RGLCESDGSPVIPCKRFRPKFGHVPSTRDKSAQPRLSPDPH 748
TS P P SSS S R + S SP P R F + ST PRL P
Sbjct: 68 TSSSAPPSPRSSSASDAPVRVISSSPSSPSPPSARHIFPFAYEASTTTVGGSPRLHPLSW 127
Query: 749 THRSISMRAPRQ 760
S+S A Q
Sbjct: 128 QQSSMSQPASPQ 139
>01_04_0049 - 15422996-15423407,15423954-15424114
Length = 190
Score = 30.7 bits (66), Expect = 8.9
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 324 NSSAHGGGAQYHTCRTHYRSHRALMHHLKTHSAHRDTSEYKFECADCEGKFANKQSLRSH 383
NSS G A T R H R HR ++ L+ +A T C+ +G ++++ +R
Sbjct: 53 NSSGSGTSAAASTGRPHQRRHRLVLRLLRLQAARGST-----RCS--QGCPSDRRRVRGA 105
Query: 384 IEWEHLLMRHHRCVKCDKVPVRNGTLRLQKTSIQ 417
+ + RH C VP+ G RL+ +Q
Sbjct: 106 AQDATIQGRH-----CRSVPLETGASRLEGGLLQ 134
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.133 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,260,486
Number of Sequences: 37544
Number of extensions: 1529366
Number of successful extensions: 3786
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3763
Number of HSP's gapped (non-prelim): 33
length of query: 1427
length of database: 14,793,348
effective HSP length: 91
effective length of query: 1336
effective length of database: 11,376,844
effective search space: 15199463584
effective search space used: 15199463584
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 66 (30.7 bits)
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