GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001657-TA|BGIBMGA001657-PA|IPR007087|Zinc finger,
C2H2-type, IPR011526|Helix-turn-helix, Psq-like,
IPR009057|Homeodomain-like, IPR007889|Helix-turn-helix, Psq
         (1427 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    48   2e-06
CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein...    38   0.002
AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein p...    32   0.12 
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    31   0.29 
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    28   2.0  
AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinestera...    26   6.1  
AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinestera...    26   6.1  

>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 48/200 (24%), Positives = 67/200 (33%), Gaps = 23/200 (11%)

Query: 204 PYKCDLCVVGFATETIYQGHIQKHHNKNKNGFSCDICDSVLNSIPILXXXXXXXXXXXXX 263
           P+KC +C  GF T    Q H+  H     +   C  CD+   +   L             
Sbjct: 154 PHKCVVCERGFKTLASLQNHVNTHTGTKPH--RCKHCDNCFTTSGELIRHIRYRHT---- 207

Query: 264 XXXXXXXKHNKP-TCDLCGNIFVTNSSLKIHMLTKHKPTPVTYNCELCAKVYKSKSGLHS 322
                   H +P  C  C    V  S LK H+ T     P  + C  C      K  L  
Sbjct: 208 --------HERPHKCTECDYASVELSKLKRHIRTHTGEKP--FQCPHCTYASPDKFKLTR 257

Query: 323 HNSSAHGGGAQYH--TCRTHYRSHRALMHHLKTHSAHRDTSEYKFECADCEGKFANKQSL 380
           H    H G   Y    C   +    +L  H   H      ++  F+C  C      K  L
Sbjct: 258 H-MRIHTGEKPYSCDVCFARFTQSNSLKAHKMIHQVG---NKPVFQCKLCPTTCGRKTDL 313

Query: 381 RSHIEWEHLLMRHHRCVKCD 400
           R H++  H   +  +C +CD
Sbjct: 314 RIHVQNLHTADKPIKCKRCD 333



 Score = 45.6 bits (103), Expect = 9e-06
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 8/112 (7%)

Query: 301 TPVTYNCELCAKVYKSKSGLHSHNSSAHGGGAQYH--TCRTHYRSHRALMHHLKTHSAHR 358
           T  TY C  C     +K  L S +   H     +    C   +++  +L +H+ TH+   
Sbjct: 123 TGSTYMCNYC-NYTSNKLFLLSRHLKTHSEDRPHKCVVCERGFKTLASLQNHVNTHTG-- 179

Query: 359 DTSEYKFECADCEGKFANKQSLRSHIEWEHLLMRHHRCVKCDKVPVRNGTLR 410
            T  ++  C  C+  F     L  HI + H   R H+C +CD   V    L+
Sbjct: 180 -TKPHR--CKHCDNCFTTSGELIRHIRYRHTHERPHKCTECDYASVELSKLK 228



 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 9/129 (6%)

Query: 274 KP-TCDLCGNIFVTNSSLKIHMLTKHKPTPVTYNCELCAKVYKSKSGLHSHNSSAHGGG- 331
           KP +CD+C   F  ++SLK H +         + C+LC      K+ L  H  + H    
Sbjct: 266 KPYSCDVCFARFTQSNSLKAHKMIHQVGNKPVFQCKLCPTTCGRKTDLRIHVQNLHTADK 325

Query: 332 -AQYHTCRTHYRSHRALMHHLKTHSAHRDTSEYKFECADCEGKFANKQSLRSHIEWEHLL 390
             +   C + +    +   H KTH       E  + C  C     + + L SH+   H  
Sbjct: 326 PIKCKRCDSTFPDRYSYKMHAKTHE-----GEKCYRCEYCPYASISMRHLESHL-LLHTD 379

Query: 391 MRHHRCVKC 399
            + ++C +C
Sbjct: 380 QKPYKCDQC 388



 Score = 38.7 bits (86), Expect = 0.001
 Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 7/115 (6%)

Query: 288 SSLKIHMLTKHKPTPVT---YNCELCAKVYKSKSGLHSHNSSAHGGGAQYHTCRTHYRSH 344
           +S K+ +L++H  T      + C +C + +K+ + L +H ++ H G  + H C+ H  + 
Sbjct: 135 TSNKLFLLSRHLKTHSEDRPHKCVVCERGFKTLASLQNHVNT-HTG-TKPHRCK-HCDNC 191

Query: 345 RALMHHLKTHSAHRDTSEYKFECADCEGKFANKQSLRSHIEWEHLLMRHHRCVKC 399
                 L  H  +R T E   +C +C+        L+ HI   H   +  +C  C
Sbjct: 192 FTTSGELIRHIRYRHTHERPHKCTECDYASVELSKLKRHIR-THTGEKPFQCPHC 245



 Score = 33.9 bits (74), Expect = 0.031
 Identities = 35/168 (20%), Positives = 57/168 (33%), Gaps = 25/168 (14%)

Query: 205 YKCDLCVVGFATETIYQGHIQKHHNKNKNGFSCDICDSVLNSIPILXXXXXXXXXXXXXX 264
           ++C LC      +T  + H+Q  H  +K    C  CDS                      
Sbjct: 298 FQCKLCPTTCGRKTDLRIHVQNLHTADKP-IKCKRCDSTFPD------------RYSYKM 344

Query: 265 XXXXXXKHNKPTCDLCGNIFVTNSSLKIHMLTKHKPTPVTYNCELCAKVYKSKSGLHSHN 324
                       C+ C    ++   L+ H+L      P  Y C+ CA+ ++ K  L  H 
Sbjct: 345 HAKTHEGEKCYRCEYCPYASISMRHLESHLLLHTDQKP--YKCDQCAQTFRQKQLLKRHM 402

Query: 325 SSAHGGG-------AQYH---TCRTHYRSHRALMHHLKTHSAHRDTSE 362
           +  H          A+ H   TC+  +R    L+ H+  H      S+
Sbjct: 403 NYYHNPDYVAPTPKAKTHICPTCKRPFRHKGNLIRHMAMHDPESTVSK 450



 Score = 29.9 bits (64), Expect = 0.50
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 204 PYKCDLCVVGFATETIYQGHIQKHHN 229
           PYKCD C   F  + + + H+  +HN
Sbjct: 382 PYKCDQCAQTFRQKQLLKRHMNYYHN 407


>CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein
           protein.
          Length = 415

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 3/118 (2%)

Query: 272 HNKPTCDLCGNIFVTNSSLKIHMLTKHKPTPVTYNCELCAKVYKSKSGLHSHNSSAHGGG 331
           H+   C  CGN+FV  ++   H  TK              +   +++G  +   ++ G  
Sbjct: 289 HHLYRCPACGNLFVELTNFYNHSCTKAPAQDGVAVASSNNQSQPARTGGSAVTITSEGQR 348

Query: 332 AQYHTCRTHYRSHRALMHHLKTHSAHRDTSE-YKFECADCEGKFANKQSLRSHIEWEH 388
            Q + C   YR+   L +    +  HR ++E +  +C  C   F+ +Q  + H+   H
Sbjct: 349 FQCNLCDMSYRT--KLQYQKHEYEVHRISNENFGIKCTICHKLFSQRQDYQLHMRAIH 404



 Score = 32.3 bits (70), Expect = 0.094
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 205 YKCDLCVVGFATETIYQGH-IQKHHNKNKN-GFSCDICDSVLN 245
           ++C+LC + + T+  YQ H  + H   N+N G  C IC  + +
Sbjct: 349 FQCNLCDMSYRTKLQYQKHEYEVHRISNENFGIKCTICHKLFS 391


>AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein
            protein.
          Length = 499

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 1238 MSLTNSLHLYNKFSPNDKLNLYDFRLKILEKLLPNPNDVNRRNVLKMKHELTKIEKVRSV 1297
            + +   LH Y K   N    +    + IL  L         R +L MK    + EK    
Sbjct: 117  LMVARELHTYTKDRNNVHAPIKKMSVSILSAL-----SCIERELLTMKLRAERAEKALRE 171

Query: 1298 IMAKKRSCPARGTRKYGKKTRYTEETLKKALDDIKSCKMSQRVASE 1343
            + ++    P  G R    +T    E  K+A +D  SC       SE
Sbjct: 172  VQSEPPETPMTGKRSRKARTPEEAEDAKRAKNDAPSCNRPDAEYSE 217


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 330 GGAQYHTCRTHYRSHRALMHHLKTHSAHRDTSEYKFECADCEGKFANKQSLRSHIEWEH 388
           GG   H C+   +    + +H   H   R      FEC  C   +    +LR+H +++H
Sbjct: 495 GGCNLHRCKLCGKVVTHIRNHYHVHFPGR------FECPLCRATYTRSDNLRTHCKFKH 547



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 6/56 (10%)

Query: 273 NKPTCDLCGNIFVTNSSLKIHMLTKHKPTPVTYNCELCAKVYKSKSGLHSHNSSAH 328
           N   C LCG + VT+  ++ H    H   P  + C LC   Y     L +H    H
Sbjct: 498 NLHRCKLCGKV-VTH--IRNHY---HVHFPGRFECPLCRATYTRSDNLRTHCKFKH 547


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 316 SKSGLHSHNSSAHGGGAQYHTCRTHYRSHRALMHH 350
           S  G   H+ S H GGA   T   H++ H A  HH
Sbjct: 700 SPYGGGGHHLSHHHGGAAAATGHHHHQHHAAPHHH 734


>AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 30/105 (28%), Positives = 38/105 (36%), Gaps = 8/105 (7%)

Query: 658 LSRGPPAQSSRLSAAKTTNRIXXXXXXXXXXXKLTSRVPPAQPSSSSTSK--RGLCESDG 715
           L+ G    S +LSAA                  + S VP A  SSSS+S       E D 
Sbjct: 45  LNNGAAIGSHQLSAAAGVGLSSQSAQSGSLASGVMSSVPAAGASSSSSSSLLSSSAEDDV 104

Query: 716 SPVIPCKR----FRPKFGHVPSTRDKSAQPRLSPDPHTHRSISMR 756
           + +   K     F P  GH  S R   A+  L    H H   + R
Sbjct: 105 ARITLSKDADAFFTPYIGHGESVRIIDAE--LGTLEHVHSGATPR 147


>AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 30/105 (28%), Positives = 38/105 (36%), Gaps = 8/105 (7%)

Query: 658 LSRGPPAQSSRLSAAKTTNRIXXXXXXXXXXXKLTSRVPPAQPSSSSTSK--RGLCESDG 715
           L+ G    S +LSAA                  + S VP A  SSSS+S       E D 
Sbjct: 45  LNNGAAIGSHQLSAAAGVGLSSQSAQSGSLASGVMSSVPAAGASSSSSSSLLSSSAEDDV 104

Query: 716 SPVIPCKR----FRPKFGHVPSTRDKSAQPRLSPDPHTHRSISMR 756
           + +   K     F P  GH  S R   A+  L    H H   + R
Sbjct: 105 ARITLSKDADAFFTPYIGHGESARIIDAE--LGTLEHVHSGATPR 147


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.133    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,370,924
Number of Sequences: 2123
Number of extensions: 56207
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 25
length of query: 1427
length of database: 516,269
effective HSP length: 73
effective length of query: 1354
effective length of database: 361,290
effective search space: 489186660
effective search space used: 489186660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)