Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001657-TA|BGIBMGA001657-PA|IPR007087|Zinc finger,
C2H2-type, IPR011526|Helix-turn-helix, Psq-like,
IPR009057|Homeodomain-like, IPR007889|Helix-turn-helix, Psq
(1427 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 44 0.001
At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein ... 44 0.001
At5g44160.1 68418.m05404 zinc finger (C2H2 type) family protein ... 38 0.037
At1g03840.1 68414.m00365 zinc finger (C2H2 type) family protein ... 38 0.049
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ... 35 0.45
At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein ... 33 1.0
At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP1... 33 1.0
At1g64620.1 68414.m07325 Dof-type zinc finger domain-containing ... 33 1.0
At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3) ... 33 1.0
At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein ... 32 2.4
At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family pr... 31 4.2
At5g22400.1 68418.m02613 rac GTPase activating protein, putative... 31 4.2
At3g30560.1 68416.m03867 hypothetical protein 31 4.2
At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family pr... 31 4.2
At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein ... 31 5.6
At3g19580.1 68416.m02483 zinc finger (C2H2 type) protein 2 (AZF2... 31 5.6
At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein ... 31 5.6
At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zin... 31 5.6
At4g21270.1 68417.m03074 kinesin-like protein A (KATA) 31 7.4
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 31 7.4
At1g69710.1 68414.m08022 zinc finger protein, putative / regulat... 31 7.4
At2g16640.1 68415.m01910 chloroplast outer membrane protein, put... 30 9.8
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 43.6 bits (98), Expect = 0.001
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 8/121 (6%)
Query: 280 CGNIFVTNSSLKIHMLTKHKPTPVTYNCEL--CAKVYKSKSGLHSHNSSAHGGGAQYHTC 337
CG F S L+ H + K V C C K + ++ L SH S H Q+ C
Sbjct: 222 CGKAFKYPSQLQKHQDSHVKLDSVEAFCSEPGCMKYFTNEECLKSHIRSCH----QHINC 277
Query: 338 RTHYRSH--RALMHHLKTHSAHRDTSEYKFECADCEGKFANKQSLRSHIEWEHLLMRHHR 395
H + + HL+TH E K E C F+ +L+ H++ H +R
Sbjct: 278 EICGSKHLKKNIKRHLRTHDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVHDDIRPFV 337
Query: 396 C 396
C
Sbjct: 338 C 338
>At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 324
Score = 43.6 bits (98), Expect = 0.001
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 8/121 (6%)
Query: 280 CGNIFVTNSSLKIHMLTKHKPTPVTYNCEL--CAKVYKSKSGLHSHNSSAHGGGAQYHTC 337
CG F S L+ H + K V C C K + ++ L SH S H Q+ C
Sbjct: 134 CGKAFKYPSQLQKHQDSHVKLDSVEAFCSEPGCMKYFTNEECLKSHIRSCH----QHINC 189
Query: 338 RTHYRSH--RALMHHLKTHSAHRDTSEYKFECADCEGKFANKQSLRSHIEWEHLLMRHHR 395
H + + HL+TH E K E C F+ +L+ H++ H +R
Sbjct: 190 EICGSKHLKKNIKRHLRTHDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVHDDIRPFV 249
Query: 396 C 396
C
Sbjct: 250 C 250
>At5g44160.1 68418.m05404 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 466
Score = 38.3 bits (85), Expect = 0.037
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 18/126 (14%)
Query: 273 NKPTCDLCGNIFVTNSSLKIHMLTKHKPTPVTYNC--ELCAKVY--KSKSGLHSHNSSAH 328
N+ C++CG F + +L++H + P + E+ +VY K+ +H H+S A
Sbjct: 64 NRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSSRAL 123
Query: 329 GG--GAQYHTCRTH---------YRSHRALMHHLKTHSAHRDTSEYKFECADCEGKFANK 377
G G + H CR H A+ K HS T EY+ DC F+ +
Sbjct: 124 GDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYR---CDCGTIFSRR 180
Query: 378 QSLRSH 383
S +H
Sbjct: 181 DSFITH 186
>At1g03840.1 68414.m00365 zinc finger (C2H2 type) family protein
contains Zinc finger,C2H2 type,domain contains Pfam
domain, PF00096: Zinc finger, C2H2 type
Length = 506
Score = 37.9 bits (84), Expect = 0.049
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 273 NKPTCDLCGNIFVTNSSLKIHMLTKHKPTPVTYNC--ELCAKVY--KSKSGLHSHNSSAH 328
N+ C++CG F + +L++H + P + E+ +VY KS +H H + A
Sbjct: 68 NRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKSCVHHHPTRAL 127
Query: 329 GG--GAQYHTCRTH----YRSHR-----ALMHHLKTHSAHRDTSEYKFECADCEGKFANK 377
G G + H CR H ++ + A+ K HS T EY+ DC F+ +
Sbjct: 128 GDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGTREYR---CDCGTIFSRR 184
Query: 378 QSLRSH 383
S +H
Sbjct: 185 DSFITH 190
>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 452
Score = 34.7 bits (76), Expect = 0.45
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 18/126 (14%)
Query: 273 NKPTCDLCGNIFVTNSSLKIHMLTKHKPTPVTY--NCELCAKVY--KSKSGLHSHNSSAH 328
N+ C++C F + +L++H + P + N E+ KVY S +H S A
Sbjct: 61 NRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQKSNKEVKKKVYVCPEVSCVHHDPSRAL 120
Query: 329 GG--GAQYHTCRTH----YRSHR-----ALMHHLKTHSAHRDTSEYKFECADCEGKFANK 377
G G + H CR H ++ + A+ K HS T EYK DC F+ +
Sbjct: 121 GDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYK---CDCGTLFSRR 177
Query: 378 QSLRSH 383
S +H
Sbjct: 178 DSFITH 183
>At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 500
Score = 33.5 bits (73), Expect = 1.0
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 18/126 (14%)
Query: 273 NKPTCDLCGNIFVTNSSLKIHMLTKHKPTPVTYNC--ELCAKVYKSK-SGLHSHNSSAHG 329
N+ C++C F + +L++H + P + E+ KVY SG H+ S
Sbjct: 59 NRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTKEVRKKVYVCPVSGCVHHDPSRAL 118
Query: 330 G---GAQYHTCRTH----YRSHR-----ALMHHLKTHSAHRDTSEYKFECADCEGKFANK 377
G G + H CR H ++ + A+ K HS T EYK DC F+ +
Sbjct: 119 GDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYK---CDCGTLFSRR 175
Query: 378 QSLRSH 383
S +H
Sbjct: 176 DSFITH 181
>At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 968
Score = 33.5 bits (73), Expect = 1.0
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 1316 KTRYTEETLKKALDDIKSCKMSQRVASETYNIPRSTLKYKLKNQHSKPVGKPPALLAEEE 1375
K+ + EE L + +I S K + S+ R L + + H + VG+ PA+ A E
Sbjct: 604 KSMFREEVLGSDIAEIVS-KWTGIPVSKLQQSERDKLLHLEEELHKRVVGQNPAVTAVAE 662
Query: 1376 EISNHIIALSDNGVPIS 1392
I LSD G PI+
Sbjct: 663 AIQRSRAGLSDPGRPIA 679
>At1g64620.1 68414.m07325 Dof-type zinc finger domain-containing
protein similar to Dof zinc finger protein GB:CAA08755
GI:3341468 from [Nicotiana tabacum]
Length = 352
Score = 33.5 bits (73), Expect = 1.0
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 692 TSRVPPAQPSSSSTSKRGLCESDGSPVIPCKRFRPKFGHVPSTR 735
+S + PSSSS+SK+ L ++ +P P PK G +T+
Sbjct: 105 SSNSSSSSPSSSSSSKKPLFANNNTPTPPLPHLNPKIGEAAATK 148
>At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3)
identical to WIP3 protein [Arabidopsis thaliana]
gi|18027014|gb|AAL55723; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 33.5 bits (73), Expect = 1.0
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 289 SLKIHMLTKHKPTPVTYNCELCAKVYKSKSGLHSHNSSAHGGGAQYHTCRTHYRSHRALM 348
+L+ H KH P ++C C K K +H + G Y TC + ++ R+L
Sbjct: 251 TLQTHYKRKHGSKP--FSCGKCGKALAVKGDWRTHEKNC--GKLWYCTCGSDFKHKRSLK 306
Query: 349 HHLKT----HSAH 357
H+++ HS H
Sbjct: 307 DHIRSFGSGHSPH 319
>At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 373
Score = 32.3 bits (70), Expect = 2.4
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 317 KSGLHSHNSSAHGGGAQYHTCRTHYRSHRALMHHLKTHSAHRDTSEYKFECADCEGKFAN 376
KS + + N + + CR H +++ L+TH H + K+ C+ C KF+
Sbjct: 288 KSVICAKNHYKRSHCPKMYMCRRCSVKHFSVLSDLRTHEKH--CGDIKWVCS-CGTKFSR 344
Query: 377 KQSLRSHI 384
K L SH+
Sbjct: 345 KDKLMSHV 352
>At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family protein
contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 307
Score = 31.5 bits (68), Expect = 4.2
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 1262 RLKILEKLLPNPNDVNRRNVLKMKHELTKIEKVRSVIMAKKRSCPARGTRKYGKKTRYTE 1321
RLK+L++L+PN V+ +L+ K +V+ ++A PA+G GK ++
Sbjct: 226 RLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQVQVKVLAADEFWPAQG----GKAPDISQ 281
Query: 1322 ETLKKALDDIKSCKMSQRVASET 1344
+K+A+D I S SQR ++ T
Sbjct: 282 --VKEAIDAILS--SSQRDSNST 300
>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
similar to rac GTPase activating protein 1 [Lotus
japonicus] GI:3695059; contains Pfam profile PF00620:
RhoGAP domain
Length = 466
Score = 31.5 bits (68), Expect = 4.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 412 QKTSIQTINIENTESKICKAENEDEIITENNVSQEFSTN 450
Q Q+ NIEN E++ +E DE+ ENN ++ T+
Sbjct: 377 QSEETQSDNIENAENQSSSSEISDELTLENNACEQRETD 415
>At3g30560.1 68416.m03867 hypothetical protein
Length = 1473
Score = 31.5 bits (68), Expect = 4.2
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 1265 ILEKLLPNPNDVNRRNVLKMKHELTKIEKVRSVIMAKKRSCPARGTRKYGKKTRYTEETL 1324
+++ L P P D + L + +++ R +M+K + G ++ KK T L
Sbjct: 202 LIDALKPKPGDYAKFQQLYVMDTDNEVDN-RIEVMSKGNNGKTEGVKQKFKKE--TVSAL 258
Query: 1325 KKALDDIKSCKMSQRVASETYNIPRSTLKYKLK 1357
K LD+I + R+A + +NI + + ++
Sbjct: 259 LKMLDEINPHVANFRIARDRFNIEKEDANFHMR 291
>At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family protein
contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 298
Score = 31.5 bits (68), Expect = 4.2
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 1262 RLKILEKLLPNPNDVNRRNVLKMKHELTKIEKVRSVIMAKKRSCPARGTRKYGKKTRYTE 1321
RLKIL++L+PN V+ +L+ K +V+ ++A PA+G GK ++
Sbjct: 220 RLKILQELVPNGTKVDLVTMLEKAISYVKFLQVQVKVLATDEFWPAQG----GKAPDISQ 275
Query: 1322 ETLKKALDDIKSCKMSQR 1339
+K A+D I S R
Sbjct: 276 --VKDAIDAILSSSQRDR 291
>At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 812
Score = 31.1 bits (67), Expect = 5.6
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 275 PTCDLCGNIFVTNSSLKIHMLTKHKPTPVTYNCELCAK 312
P C+ C N F ++ L HM T+H Y C LC +
Sbjct: 198 PMCEFCRNPFYGDNELYTHMSTEH------YTCHLCQR 229
>At3g19580.1 68416.m02483 zinc finger (C2H2 type) protein 2 (AZF2)
identical to Cys2/His2-type zinc finger protein 2
[Arabidopsis thaliana] gi|6009885|dbj|BAA85107
Length = 273
Score = 31.1 bits (67), Expect = 5.6
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 201 QKLPYKCDLCVVGFATETIYQGHIQKHHNKNKNGFSCDICDSVLNSIPIL 250
+ LPYKC++C F + GH H K S DS +I I+
Sbjct: 102 KNLPYKCNVCEKAFPSYQALGGHKASHRIKPPTVISTTADDSTAPTISIV 151
>At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein
similar to finger protein pcp1 GB:S48856 from [Solanum
tuberosum] contains Pfam domain, PF00096: Zinc finger,
C2H2 type
Length = 513
Score = 31.1 bits (67), Expect = 5.6
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 19/127 (14%)
Query: 273 NKPTCDLCGNIFVTNSSLKIHMLTKHKPTPVTY--NCELCAK---VYKSKSGLHSHNSSA 327
N+ C++C F + +L++H + P + N E+ K V S +H S A
Sbjct: 97 NRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIRKKVYVCPEASCVHHDPSRA 156
Query: 328 HGG--GAQYHTCRTH----YRSHR-----ALMHHLKTHSAHRDTSEYKFECADCEGKFAN 376
G G + H CR H ++ + A+ K HS T EY+ DC F+
Sbjct: 157 LGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDCKAHSKTCGTKEYR---CDCGTLFSR 213
Query: 377 KQSLRSH 383
+ S +H
Sbjct: 214 RDSFITH 220
>At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zinc
finger (C2H2 type) protein TT1 identical to transparent
testa 1 GI:18253279 from [Arabidopsis thaliana];
contains Pfam profile PF00096: Zinc finger, C2H2 type
Length = 303
Score = 31.1 bits (67), Expect = 5.6
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 289 SLKIHMLTKHKPTPVTYNCELCAKVYKSKSGLHSHNSSAHGGGAQYHTCRTHYRSHRALM 348
+L+ H KH P ++C LC K+ K +H + G C + ++ R+L
Sbjct: 215 TLQTHYKRKHGHKP--FSCRLCGKLLAVKGDWRTHEKNC--GKRWVCVCGSDFKHKRSLK 270
Query: 349 HHLK 352
H+K
Sbjct: 271 DHVK 274
>At4g21270.1 68417.m03074 kinesin-like protein A (KATA)
Length = 793
Score = 30.7 bits (66), Expect = 7.4
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
Query: 1276 VNRRNVLKMKHELTKIEKVRSVIMAKKRSCPARGTR-KYGK-KTRYTEETLKKALDDIKS 1333
VN+++V M ++ IE+ V K R K GK T+ E + + +K
Sbjct: 46 VNKQDVT-MNSDVGSIEECGKVDFTKDEILALLSERAKAGKFDTKAKIEQMTDIIKRLKV 104
Query: 1334 CKMSQRVASETYNIPRSTLKYKLKNQHSKPVGKPPALLAEEEEISNHIIALSDNGVPI 1391
C + A ET+ + LK L++ K K +EEE+ I L +N V +
Sbjct: 105 CVKWFQQADETHVQEKENLKVSLESSEQKYNHKELEARTKEEELQATISKLEENVVSL 162
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 30.7 bits (66), Expect = 7.4
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 341 YRSHRALMHHLKTHSAHRDTSEYKFECADCEGKFANKQSLR 381
Y SHR+ H THS+HR S+ + EC+ E + K+ R
Sbjct: 245 YHSHRSSAH---THSSHRRRSKDREECSREESRSDRKERAR 282
>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1028
Score = 30.7 bits (66), Expect = 7.4
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 887 PPPTDPYEAFRLIIDNELLDLIVRETNLNAARVASSENVKQTSRIKSWKDVTRDEL 942
P P Y++F LI + LDLI ++ + V +++ ++ WK + E+
Sbjct: 82 PRPEKEYQSFSLICPDRSLDLICKDKDEAEVWVVGLKSLITRVKVSKWKTTIKPEI 137
>At2g16640.1 68415.m01910 chloroplast outer membrane protein, putative
similar to chloroplast protein import component Toc159
[Pisum sativum] GI:8489806, chloroplast outer envelope
protein 86 [Pisum sativum] GI:599958, GTP-binding protein
[Pisum sativum] GI:576509
Length = 1206
Score = 30.3 bits (65), Expect = 9.8
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 991 LHFSSESSEEDRLIKIRPFMDHFNNKMNTIYSPGKELSLDESMVLWRGRLLFRQYIKNKR 1050
L SS+S EE ++ PF +M T+ K+ LDE + +R +LL ++ +K +R
Sbjct: 841 LEESSDSDEESEYDQLPPFKSLTKAQMATLSKSQKKQYLDE--MEYREKLLMKKQMKEER 898
Query: 1051 HK 1052
+
Sbjct: 899 KR 900
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.133 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,951,544
Number of Sequences: 28952
Number of extensions: 1320693
Number of successful extensions: 3753
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3727
Number of HSP's gapped (non-prelim): 43
length of query: 1427
length of database: 12,070,560
effective HSP length: 90
effective length of query: 1337
effective length of database: 9,464,880
effective search space: 12654544560
effective search space used: 12654544560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)
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