GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001655-TA|BGIBMGA001655-PA|IPR001683|Phox-like
         (272 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    23   1.9  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   4.3  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   9.9  

>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 103 PIVGYEVMEERARFTIYKLKVEDDKRDQSWLVFRRYTDFVRLYTRLKSEQPNIEL 157
           P  G + M++   F  +KLK+ ++  D+   +  +  DF+ +   +   QP   L
Sbjct: 61  PSTGEQWMQKVVSF--HKLKLTNNISDKHGFLKEKAVDFLTILNSMHKYQPRFHL 113


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 138 YTDFVRLYTRLKSEQPNIELPLPGKRWFRD 167
           Y D V+   RL+ E+ + + PLP  +  RD
Sbjct: 170 YEDIVKHLERLREERCDPDRPLPLDQKARD 199


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 97  FDKLQIPIVGYEVMEERA 114
           F KL+  IVG  V++E+A
Sbjct: 165 FSKLKHKIVGESVIDEKA 182


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,393
Number of Sequences: 317
Number of extensions: 2425
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 272
length of database: 114,650
effective HSP length: 56
effective length of query: 216
effective length of database: 96,898
effective search space: 20929968
effective search space used: 20929968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)