GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001655-TA|BGIBMGA001655-PA|IPR001683|Phox-like
         (272 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034364-4|CAA22253.1|  162|Caenorhabditis elegans Hypothetical ...    40   0.001
Z69384-9|CAD89747.1|  497|Caenorhabditis elegans Hypothetical pr...    37   0.018
Z69383-14|CAA93405.3|  497|Caenorhabditis elegans Hypothetical p...    37   0.018
Z79754-2|CAB02091.1|  578|Caenorhabditis elegans Hypothetical pr...    32   0.38 
U41545-4|AAK39134.1|  665|Caenorhabditis elegans Temporarily ass...    31   1.2  
Z81049-3|CAB02846.2|  631|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AL034364-4|CAA22253.1|  162|Caenorhabditis elegans Hypothetical
           protein W06D4.5 protein.
          Length = 162

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 13/115 (11%)

Query: 113 RARFTIYKLKVEDDK---RDQSWLVFRRYTDFVRLYTRLKSEQPNIELPLPGKRW----- 164
           + R+T Y++++  +    + +   V RRY+DF  +   L+ +   +   LPGK +     
Sbjct: 43  KMRYTDYEIRMRSNLPVFKQKESSVRRRYSDFEWVRAELERDSKIVVPTLPGKSFKRQLP 102

Query: 165 FRDN---FEPTFLEERVRGLQTFVNVIL-YKLPNNPIVREFFCLDEPPQDFSYQP 215
           FR +   FE  F+E R + L+ F+N +  + L  N      F L EP  D +Y P
Sbjct: 103 FRSDDGIFEEEFIENRRKALELFINKVAGHPLAQNERSLHIF-LQEPTIDKNYVP 156


>Z69384-9|CAD89747.1|  497|Caenorhabditis elegans Hypothetical
           protein F13E9.1 protein.
          Length = 497

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 104 IVGYEVMEERARFTIYKLKVEDDKRDQSWLVFRRYTDFVRLYTRLKSEQPNIELPLPGKR 163
           I+ + +++E  ++T+Y++++  D    +W V RRY+DF         ++    LP P KR
Sbjct: 21  ILNFRMIDE-GKYTVYRIQITVDT--YTWTVERRYSDFDAYDVHRFLDRKKSFLP-PKKR 76

Query: 164 WFRDNFEPTFLEERVRGLQTFVNVIL 189
               + E  F+EER   L+ +V  +L
Sbjct: 77  LGNKDLE--FIEERRLELEKYVRALL 100


>Z69383-14|CAA93405.3|  497|Caenorhabditis elegans Hypothetical
           protein F13E9.1 protein.
          Length = 497

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 104 IVGYEVMEERARFTIYKLKVEDDKRDQSWLVFRRYTDFVRLYTRLKSEQPNIELPLPGKR 163
           I+ + +++E  ++T+Y++++  D    +W V RRY+DF         ++    LP P KR
Sbjct: 21  ILNFRMIDE-GKYTVYRIQITVDT--YTWTVERRYSDFDAYDVHRFLDRKKSFLP-PKKR 76

Query: 164 WFRDNFEPTFLEERVRGLQTFVNVIL 189
               + E  F+EER   L+ +V  +L
Sbjct: 77  LGNKDLE--FIEERRLELEKYVRALL 100


>Z79754-2|CAB02091.1|  578|Caenorhabditis elegans Hypothetical
           protein F25H2.2 protein.
          Length = 578

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 11/112 (9%)

Query: 100 LQIPIVGYEVMEERA-RFTIYKLKVEDDKRDQSWLVFRRYTDFVRLYTRLKSEQPNIELP 158
           L + I  Y  +++   R+T++ + +   +     L  RRY++FV L+  LK    +   P
Sbjct: 169 LPVTIPSYNTVQDSLERYTVFNIHMAGRQ-----LGSRRYSEFVELHLALKKHFYDYCFP 223

Query: 159 -LPGKRWFRDNFEPTFLEERVRGLQTFVNVI--LYKLPNNPIVREFFCLDEP 207
            LPGK  F+       L+ R RGL+ ++  I  +  +  + +V++F    +P
Sbjct: 224 QLPGKWPFK--LSEQQLDSRRRGLEQYLEKICTIRVIAESELVQKFLMECDP 273


>U41545-4|AAK39134.1|  665|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 52 protein.
          Length = 665

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 7/66 (10%)

Query: 134 VFRRYTDFVRLYTRLKSEQPNIELPLPGKRWFRDNFEP--TFLEE--RVRG--LQTFVNV 187
           VF ++  F++LYT   S  PN  L +  K   R++F    T +EE  RV G  LQT++ +
Sbjct: 124 VFTKFVPFLKLYTSYASHYPN-SLKIFAKLMSRNDFRKALTKIEEDPRVDGKKLQTYLIM 182

Query: 188 ILYKLP 193
            + ++P
Sbjct: 183 PIQRIP 188


>Z81049-3|CAB02846.2|  631|Caenorhabditis elegans Hypothetical
           protein C48D1.1a protein.
          Length = 631

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 4/42 (9%)

Query: 115 RFTIYKLKVEDDKRDQSWLVFR----RYTDFVRLYTRLKSEQ 152
           +F++ +LK+ +  + +SW +FR    R+ D VR+   + +E+
Sbjct: 78  QFSLKELKIGNFSKSKSWCIFRRKETRHVDIVRILEAVLNEE 119


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.135    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,556,954
Number of Sequences: 27539
Number of extensions: 273426
Number of successful extensions: 678
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 677
Number of HSP's gapped (non-prelim): 6
length of query: 272
length of database: 12,573,161
effective HSP length: 80
effective length of query: 192
effective length of database: 10,370,041
effective search space: 1991047872
effective search space used: 1991047872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)