GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001655-TA|BGIBMGA001655-PA|IPR001683|Phox-like
         (272 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 17  NDVSSASSEDNTTFGKIRR-YYKNRRDSTSDSEMPVRPQRMH 57
           N  SS      T  GK +  YY     +  DSE  + P+R H
Sbjct: 369 NRYSSGRVLMRTVRGKEKTCYYPYHPSTQEDSEEHLTPKRFH 410


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 17  NDVSSASSEDNTTFGKIRR-YYKNRRDSTSDSEMPVRPQRMH 57
           N  SS      T  GK +  YY     +  DSE  + P+R H
Sbjct: 369 NRYSSGRVLMRTVRGKEKTCYYPYHPSTQEDSEEHLTPKRFH 410


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,572
Number of Sequences: 429
Number of extensions: 3383
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 2
length of query: 272
length of database: 140,377
effective HSP length: 57
effective length of query: 215
effective length of database: 115,924
effective search space: 24923660
effective search space used: 24923660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)