Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001654-TA|BGIBMGA001654-PA|IPR007087|Zinc finger,
C2H2-type
(261 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30150.1 68417.m04287 expressed protein 31 1.0
At3g60200.1 68416.m06726 expressed protein hypothetical proteins... 31 1.0
At1g13030.1 68414.m01511 sphere organelles protein-related conta... 29 3.1
At1g56210.1 68414.m06460 copper chaperone (CCH)-related low simi... 29 4.2
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 28 5.5
At2g29670.1 68415.m03606 expressed protein 28 5.5
At2g22795.1 68415.m02704 expressed protein 28 5.5
At5g13130.1 68418.m01504 hypothetical protein low similarity to ... 28 7.3
At1g03820.1 68414.m00363 expressed protein similar to arabinogal... 28 7.3
At4g19003.2 68417.m02800 expressed protein contains Pfam PF05871... 27 9.6
At4g19003.1 68417.m02799 expressed protein contains Pfam PF05871... 27 9.6
At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot... 27 9.6
>At4g30150.1 68417.m04287 expressed protein
Length = 2009
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 175 LKPKLYTPEKKHNKRETTDNA--QCTDSKTSTIDTKAEDHREVNIKNEN 221
LK KL +P+K ++T N+ Q DS ++TKAE+ K N
Sbjct: 2 LKRKLTSPKKSKPSKKTKKNSKTQFDDSPVEVVETKAEELPRTGSKKSN 50
>At3g60200.1 68416.m06726 expressed protein hypothetical proteins
At2g44600 - Arabidopsis thaliana, EMBL:AAC27462
Length = 305
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 35 RINITFQIKKLEAQSDLSNY-SDQIDSNELSNGTDLFACDKTSISSSTDAER 85
R N + Q KK+ S+L S+ D+N SN +CD + ISSS+ + R
Sbjct: 107 RSNKSKQGKKVSRFSNLFRARSEDFDTNPKSNNPRFSSCDASEISSSSSSSR 158
>At1g13030.1 68414.m01511 sphere organelles protein-related contains
weak similarity to Swiss-Prot:Q09003 sphere organelles
protein SPH-1 (Sphere protein 1) [Xenopus laevis]
Length = 608
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 180 YTPEKKHNK-RETTDNAQCTDSKTSTIDTKAE--DHREVNIKNENIMEMK 226
+ PEKK +K R+T+ Q T K +DT E D RE N+++ K
Sbjct: 155 FVPEKKASKKRKTSSKNQSTKRKKCKLDTTEESPDERENTAVVSNVVKKK 204
>At1g56210.1 68414.m06460 copper chaperone (CCH)-related low
similarity to copper homeostasis factor
[GI:3168840][PMID:9701579] and farnesylated proteins
ATFP3 [GI:4097547] and GMFP7 [Glycine max][GI:4097573];
contains PF00403 Heavy-metal-associated domain
Length = 364
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 131 IDTDGSSDEAPLSRIVETDMSIKANQVDSPHNVMGVPNIVIVASLKPKLYTPEKKHNKRE 190
+D D + + I+ ++ +K + N +P I KPK P++K+ K++
Sbjct: 70 VDIDVKQHKVTVIGIISPEILLKKLN-KAGKNAEQLPEIPDPVDNKPKPVDPKEKNKKKK 128
Query: 191 TTDNAQCTDSKTST 204
+ Q T+ TS+
Sbjct: 129 KEEKVQITNEATSS 142
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
(CHRromatin Organization MOdifier)
Length = 2228
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 172 VASLKPKLYTPEKKHNKR-ETTDNAQCTDSKTSTIDTKAEDHREVNIKNENIMEM 225
V S + L++ EK+ + E N QC + + +T AE+ E ++E M+M
Sbjct: 2165 VESERTPLHSDEKQEEQESENALNKQCEPIEAESQNTNAEEEAEAQEEDEESMKM 2219
>At2g29670.1 68415.m03606 expressed protein
Length = 536
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 128 PHHIDTDGSSDEAPLSRIVE-TDMSIKANQVDSP 160
PHH D D +S E P + +V + + +KAN VD P
Sbjct: 127 PHH-DDDENSIEPPWNEMVHLSSIEMKANSVDLP 159
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 177 PKLYTPEKKHNKRETTDNAQCTDSKTSTIDTKAEDHREVNIKNENI 222
P+ T EK++ K E ++A ++K +TK ++ N EN+
Sbjct: 592 PQEETKEKENEKIEKEESASQEETKEKETETKEKEESSSNESQENV 637
>At5g13130.1 68418.m01504 hypothetical protein low similarity to
microrchidia [Mus musculus] GI:5410255
Length = 706
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 152 IKANQVDSPHNVMGVPNIVIVASLKPKLYTPEKKH 186
++AN + HN G V++A L+ +L T +K +
Sbjct: 458 LEANFIQPAHNKQGFERTVVLAKLESRLVTHQKNY 492
>At1g03820.1 68414.m00363 expressed protein similar to
arabinogalactan-protein; AGP (GI:1087015) {Pyrus
communis}; similar to Protein E6. (SP:Q01197) {Gossypium
hirsutum}
Length = 222
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 7 TQESWAITGERLDSKYEKCL-NITQEIYKRINITF-QIKKLEAQSDLSNYSDQIDSNELS 64
T+ESW + D ++EK + +E ++ F + ++ E DL+ D+ ++N +
Sbjct: 78 TKESWPSSSTTTDEEFEKLMATFDEEKNTKLPEAFEEEEESEDSEDLNEPKDKYNNNNNN 137
Query: 65 NG 66
NG
Sbjct: 138 NG 139
>At4g19003.2 68417.m02800 expressed protein contains Pfam PF05871:
Eukaryotic protein of unknown function (DUF852)
Length = 179
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 16 ERLDSKYEKCLNITQEIYKRINITFQIKKLEAQSDLSNYSDQIDSNELSNGTDLFACDKT 75
E LD + KCL + I +I Q + D ++I S S GT+L D+T
Sbjct: 88 EWLDKGHRKCLILWHRIQDWADIVLQFVRDNGLEDSVMTVEEIRSGTESLGTELQGIDRT 147
>At4g19003.1 68417.m02799 expressed protein contains Pfam PF05871:
Eukaryotic protein of unknown function (DUF852)
Length = 179
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 16 ERLDSKYEKCLNITQEIYKRINITFQIKKLEAQSDLSNYSDQIDSNELSNGTDLFACDKT 75
E LD + KCL + I +I Q + D ++I S S GT+L D+T
Sbjct: 88 EWLDKGHRKCLILWHRIQDWADIVLQFVRDNGLEDSVMTVEEIRSGTESLGTELQGIDRT 147
>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2
protein, Xenopus laevis, PIR:T30335
Length = 1229
Score = 27.5 bits (58), Expect = 9.6
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 16 ERLDSKYEKCLNITQEIYKRINITFQIKKLEAQSD----LSNYSDQIDSNELSNGTDL-- 69
E+L S YE + E+ + ++ Q K +EA SD L N S + + +L N L
Sbjct: 827 EKLMSLYENAMKEKDELKRLLSSPDQKKPIEANSDTEMELCNISSEKSTEDL-NSAKLKL 885
Query: 70 -FACDKTSISSST 81
A +K SIS+ T
Sbjct: 886 ELAQEKLSISAKT 898
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.309 0.123 0.341
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,775,982
Number of Sequences: 28952
Number of extensions: 161056
Number of successful extensions: 365
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 15
length of query: 261
length of database: 12,070,560
effective HSP length: 80
effective length of query: 181
effective length of database: 9,754,400
effective search space: 1765546400
effective search space used: 1765546400
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 58 (27.5 bits)
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