GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001654-TA|BGIBMGA001654-PA|IPR007087|Zinc finger,
C2H2-type
         (261 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.1  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    22   5.4  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   7.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.1  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           21   9.4  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 8/48 (16%)

Query: 181 TPEKKHNKRE---TTDNAQCTD-----SKTSTIDTKAEDHREVNIKNE 220
           TP    +KRE   T+D AQ  D      K    + + E+H  V IK E
Sbjct: 840 TPRSTPDKREKSPTSDKAQEADGEVVVKKEVDEEERLENHTSVKIKRE 887


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 203 STIDTKAEDHRE 214
           S ID KAE+H+E
Sbjct: 176 SVIDEKAEEHKE 187


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 168 NIVIVASLKPKLYTPEKKHNKRETTDNA-QCTD 199
           NI I+  L   L    +KH K+E+ D   + TD
Sbjct: 5   NITILLLLTIGLAAAARKHQKQESRDEEYEATD 37


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 9    ESWAITGERLDSKYEKCLNI 28
            E W   G  LD +Y KC  +
Sbjct: 1508 EKWNFDGLDLDWEYPKCWQV 1527



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 9    ESWAITGERLDSKYEKCLNI 28
            E W   G  LD +Y KC  +
Sbjct: 2431 EEWNFDGLDLDWEYPKCWQV 2450


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 206 DTKAEDHREVNIKNEN 221
           D K+ED   +++KNEN
Sbjct: 214 DGKSEDVPVISLKNEN 229


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.309    0.123    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,721
Number of Sequences: 317
Number of extensions: 1513
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 261
length of database: 114,650
effective HSP length: 56
effective length of query: 205
effective length of database: 96,898
effective search space: 19864090
effective search space used: 19864090
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 42 (21.0 bits)