Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001654-TA|BGIBMGA001654-PA|IPR007087|Zinc finger,
C2H2-type
(261 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 32 0.073
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 29 0.51
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.90
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 28 1.6
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 1.6
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 1.6
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 27 2.7
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 26 4.8
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 26 4.8
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 26 4.8
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 26 6.3
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 25 8.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.4
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 32.3 bits (70), Expect = 0.073
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 183 EKKHNKRETTDNAQCTDSKTSTIDTKAEDHREVNIKNENI 222
E+K + +ET D + TDSK + +D++E N K E +
Sbjct: 508 EEKTDSKETADKVEQTDSKDTNEKPAKDDNKEANEKAEKV 547
Score = 28.7 bits (61), Expect = 0.90
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 183 EKKHNKRETTDNAQCTDSKTSTIDTKAEDHREVNIKNE 220
++K + +ET D + T+SK + + K D EV+ K E
Sbjct: 472 DEKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEE 509
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 29.5 bits (63), Expect = 0.51
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 181 TPEKKHNKRETTDNAQCTDSKTSTIDTKAEDHREVNIKNENIMEM 225
+PE ++ D+ + T+ TSTI++K + +E N+ E I+E+
Sbjct: 661 SPENIEKLKQNDDHFEVTEEITSTINSKISEKQENNVA-ETILEV 704
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 0.90
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 172 VASLKPKLYTPEKKHNKRETTDNAQCTDSKTSTIDTK-AEDHREVNIKNENIMEMKN 227
+ASL KL+ E N + T + + T + TI +K AE ++ N + +MKN
Sbjct: 1084 IASLSLKLFQAEDTKNSYDQT-SPEATQERNRTISSKLAEMEKQKNESKAALEQMKN 1139
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 27.9 bits (59), Expect = 1.6
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 19 DSKYEKCLNITQEIYKRI-NITFQIKKLEAQSDLSNYSDQIDSNELSNGTDLFACDKTSI 77
D++ + +YK + N FQ KL+ N +DQI NE S D D SI
Sbjct: 400 DTEIVNAGGVNSLVYKHLLNTDFQ--KLDLNDTTKNQNDQILPNETSESDD----DANSI 453
Query: 78 SSSTDAE 84
SS + E
Sbjct: 454 SSMENEE 460
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 183 EKKHNKRETTDNAQCTDSKTSTI---DTKAEDHRE----VNIKNENIMEMK 226
+K NK+ D Q TD+ T+TI D K D E VN + +N++ +
Sbjct: 337 DKGENKKRQDDVDQATDNNTNTILEDDEKDNDEEEEEEIVNAREKNLLNQQ 387
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 183 EKKHNKRETTDNAQCTDSKTSTI---DTKAEDHRE----VNIKNENIMEMK 226
+K NK+ D Q TD+ T+TI D K D E VN + +N++ +
Sbjct: 337 DKGENKKRQDDVDQATDNNTNTILEDDEKDNDEEEEEEIVNAREKNLLNQQ 387
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 131 IDTDGSSDEAPLSR-IVETDMSIKANQVDSPHNVMGVPNI 169
I G S++ P ++ I++T M +N +D P N +G +I
Sbjct: 390 ISASGFSNDNPANKNIIQTPMFGSSNTIDGPINPIGASSI 429
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 128 PHHIDTDGSSDEAPLSRIVETDMSIKANQVDSPHNV 163
P ++D + +SD PLS ++ S NQ +PH +
Sbjct: 143 PSYMDDEEASDSLPLSLSSQSLSSQVTNQKPAPHRL 178
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 20 SKYEKCLNITQEIYKRINITFQIKKLEAQSDLSNYSDQIDSNELSNG 66
S++ K +I + Y+RIN ++K +A++DL S DSN+ +NG
Sbjct: 16 SEFPKSYDIDEIEYERINQLSKLKLEDARADLQ--SSMEDSNK-ANG 59
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 169 IVIVASLKPKLYTPEKKHNKRETTDNAQCTDSKTSTID 206
+ I S++ L P+KK R T N T+SK S D
Sbjct: 988 VEIWKSIRRSLTNPQKKGKFRRTLSNTITTESKLSEKD 1025
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 181 TPEKKHNKRE------TTDNAQCTDSKTSTIDTKAEDHREVNIKNENIMEMK 226
TP KK N R TTD ++ S +D VN+ NE+ ++K
Sbjct: 402 TPSKKANARSVSFTQTTTDTLSESEKFASNVDLDENFDFNVNVTNEDAKQLK 453
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 38 ITFQIKKLEAQSDLSNYSDQIDSNELSNGTDLFACDKTSI 77
I + K ++ + N+S +DS EL++ +F C +I
Sbjct: 398 IELENTKWFVENQVDNHSIVLDSVELNHSVQIFGCSNCTI 437
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 49 SDLSNYSDQIDSNELSNGTDLFACDKTSISSSTDAERPQAS 89
S + N S ++ + S+GT++ +S SSS+ + P +S
Sbjct: 713 SSIPNNSTEVKTASTSSGTEIKTASTSSGSSSSSSYTPASS 753
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.309 0.123 0.341
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 950,547
Number of Sequences: 5004
Number of extensions: 33621
Number of successful extensions: 115
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 16
length of query: 261
length of database: 2,362,478
effective HSP length: 71
effective length of query: 190
effective length of database: 2,007,194
effective search space: 381366860
effective search space used: 381366860
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 53 (25.4 bits)
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