GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001654-TA|BGIBMGA001654-PA|IPR007087|Zinc finger,
C2H2-type
         (261 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0047 - 429838-429960,430413-430508,430589-430596,431088-43...    31   0.71 
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362...    30   2.2  
11_04_0265 + 15541329-15541568,15541653-15541901,15542172-155423...    29   2.9  
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997...    28   6.6  
07_03_0149 - 14452654-14452666,14452943-14454699,14454886-144549...    28   6.6  
06_01_1034 + 8110347-8110943,8111201-8111512,8111841-8112011,811...    28   6.6  

>06_01_0047 -
          429838-429960,430413-430508,430589-430596,
          431088-431141,431226-431274,431368-431466,
          431560-431639,431926-431989,432082-432255,
          432342-432965,433046-433189,433262-433372,
          433442-433498,433664-433798
          Length = 605

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 17/43 (39%), Positives = 20/43 (46%)

Query: 44 KLEAQSDLSNYSDQIDSNELSNGTDLFACDKTSISSSTDAERP 86
          KLE  S   N SD I S  L N  D + CD +  S S   + P
Sbjct: 8  KLEDCSQSLNESDDIHSESLPNNDDNYQCDSSDNSDSNHMDVP 50


>07_03_0562 +
           19535801-19535865,19535972-19536017,19536125-19536223,
           19536588-19536674,19537545-19537613,19537702-19538710,
           19539217-19539365,19539453-19540487,19540488-19541003
          Length = 1024

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 141 PLSRIVETDMSIKA-NQVDSPHNVMGVPNIVIVASLKPKLYTPEKKHNKRET 191
           P   +   DMS+   N++ + +NV+GVP  +    +KP+L+    +  +R T
Sbjct: 597 PTESVNPKDMSLSLLNRITTGNNVVGVPGPLESPEIKPRLFGVTAEPQQRST 648


>11_04_0265 +
           15541329-15541568,15541653-15541901,15542172-15542321,
           15542427-15542901,15543132-15543445,15543875-15543973,
           15544567-15544659,15544737-15544922
          Length = 601

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 180 YTPEKKHNKRETTDNAQCTDSKTSTIDTKAEDHR---EVNIKNENIMEMKNCSXXXXXXX 236
           + P+KK   ++    A  T SK S    KA+  R    VN K+E   ++ + S       
Sbjct: 89  WQPKKKDRSKDDEVPANTTGSKKSERSAKAKKRRGERSVNRKDEGFHDVTHVSPKGEPLA 148

Query: 237 XXXXXXXHMSMSHILTPSQEIRRTR 261
                    S   I+  S+E+ R++
Sbjct: 149 PKTARAKFSSQCGIINSSEELERSK 173


>10_08_0911 - 21499196-21499236,21499368-21499488,21499665-21499789,
            21500187-21500418,21500488-21500668,21501342-21501438,
            21501641-21501779,21502024-21502351,21502890-21503137,
            21503270-21503543,21504200-21504291,21504451-21504521,
            21505091-21505181,21506526-21507380,21507482-21507594,
            21508007-21508074,21508655-21508835,21509084-21509186,
            21509273-21509379,21510046-21511584,21511661-21511771,
            21511856-21511908,21511988-21512063,21512147-21512366,
            21512477-21512901,21513193-21513372,21513503-21515474
          Length = 2680

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 6/94 (6%)

Query: 133  TDGSSDEAPLSRIVETDMSIKANQVDSPHNVMGVPNIVIVASL---KPKLYTPEKKHNKR 189
            T GSS+   LS  VE + S+    + S  + +  P+I   ++    +  L T ++   K 
Sbjct: 1905 TIGSSNNMNLS--VEKNSSVHGVGLRSEDSSVSEPHIQAASAAPTSRKNLTTTDRAKRKL 1962

Query: 190  -ETTDNAQCTDSKTSTIDTKAEDHREVNIKNENI 222
              + DN+  T +KTS I  K+ D  E    N  I
Sbjct: 1963 VPSMDNSNRTTNKTSEIPGKSADSTEPRRSNRRI 1996


>07_03_0149 -
           14452654-14452666,14452943-14454699,14454886-14454990,
           14455808-14455978,14456309-14456641,14456900-14457492,
           14458864-14458906
          Length = 1004

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/36 (27%), Positives = 21/36 (58%)

Query: 30  QEIYKRINITFQIKKLEAQSDLSNYSDQIDSNELSN 65
           ++++K  ++  +  KL+   D+SN  D  D NE+ +
Sbjct: 309 EDLWKDFSLAAECTKLDTNEDMSNEKDVDDENEMDD 344


>06_01_1034 +
           8110347-8110943,8111201-8111512,8111841-8112011,
           8112780-8114576
          Length = 958

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/36 (27%), Positives = 21/36 (58%)

Query: 30  QEIYKRINITFQIKKLEAQSDLSNYSDQIDSNELSN 65
           ++++K  ++  +  KL+   D+SN  D  D NE+ +
Sbjct: 289 EDLWKDFSLAAECTKLDTNEDMSNEKDVDDENEMDD 324


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.309    0.123    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,535,068
Number of Sequences: 37544
Number of extensions: 173475
Number of successful extensions: 366
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 363
Number of HSP's gapped (non-prelim): 6
length of query: 261
length of database: 14,793,348
effective HSP length: 81
effective length of query: 180
effective length of database: 11,752,284
effective search space: 2115411120
effective search space used: 2115411120
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 59 (27.9 bits)