GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001654-TA|BGIBMGA001654-PA|IPR007087|Zinc finger,
C2H2-type
         (261 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38223| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_19460| Best HMM Match : AAA (HMM E-Value=0)                         30   2.2  
SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)                  29   2.9  
SB_5299| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_4364| Best HMM Match : E1_dh (HMM E-Value=3.1e-13)                  28   6.7  
SB_11852| Best HMM Match : fn3 (HMM E-Value=1.2e-24)                   28   8.9  

>SB_38223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 20 SKYEKCLNITQEIYKRIN-ITFQIKKLEAQSDLSNYSDQI 58
          S+++   N T +I  RIN I FQ++ L+  S  +NY D +
Sbjct: 52 SRHQNEANETMDINTRINGIEFQVRGLKLDSSAANYYDDL 91


>SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 908

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/40 (40%), Positives = 18/40 (45%)

Query: 155 NQVDSPHNVMGVPNIVIVASLKPKLYTPEKKHNKRETTDN 194
           N  +   NV G+ NI I   L  KL      HN RET  N
Sbjct: 647 NSCERSANVAGIDNIEISLELNKKLDEGNSDHNIRETRTN 686


>SB_19460| Best HMM Match : AAA (HMM E-Value=0)
          Length = 340

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/40 (40%), Positives = 18/40 (45%)

Query: 155 NQVDSPHNVMGVPNIVIVASLKPKLYTPEKKHNKRETTDN 194
           N  +   NV G+ NI I   L  KL      HN RET  N
Sbjct: 180 NSCERSANVAGIDNIEISLELNKKLDEGNSDHNIRETRTN 219


>SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)
          Length = 933

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/37 (32%), Positives = 26/37 (70%)

Query: 190 ETTDNAQCTDSKTSTIDTKAEDHREVNIKNENIMEMK 226
           ET D+ + TDSK+ +++ ++ + + V+I +E + +MK
Sbjct: 450 ETKDDDEETDSKSGSVNEQSTESQAVHIPHEIVHDMK 486


>SB_5299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 21  KYEKCLNITQEIYKRINITFQIKKLEAQSDLSNYSDQIDSNELSNGTDLFACDKTSISS 79
           KYEK L   ++ Y+R+   +  K     S  S Y + I +++LS    L ACD    S+
Sbjct: 619 KYEKILARGKKAYERL--LWNGKYYNYDSSTSKYHNSIMADQLSGQWYLHACDLAQTSN 675


>SB_4364| Best HMM Match : E1_dh (HMM E-Value=3.1e-13)
          Length = 238

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 21  KYEKCLNITQEIYKRINITFQIKKLEAQSDLSNYSDQID 59
           K+   L++  ++Y ++ +  Q +K E Q  L NYS + +
Sbjct: 192 KFPSVLSLFDDVYDKLPLHLQEQKKELQEHLQNYSHKYE 230


>SB_11852| Best HMM Match : fn3 (HMM E-Value=1.2e-24)
          Length = 691

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 26  LNITQEIYKRI---NITFQIKKLEAQSDLSNYSDQIDSNELSNGTDLFACDKTSISSS 80
           +NIT E +      N + + ++LE Q    N ++   S  ++NGT L +C K S+ S+
Sbjct: 387 VNITGETWSDSLLDNSSLEFRELE-QKIARNVAEFYGSKNVTNGTTLLSCRKGSVIST 443


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.309    0.123    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,912,869
Number of Sequences: 59808
Number of extensions: 230697
Number of successful extensions: 576
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 572
Number of HSP's gapped (non-prelim): 7
length of query: 261
length of database: 16,821,457
effective HSP length: 81
effective length of query: 180
effective length of database: 11,977,009
effective search space: 2155861620
effective search space used: 2155861620
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 59 (27.9 bits)