GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001654-TA|BGIBMGA001654-PA|IPR007087|Zinc finger,
C2H2-type
         (261 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    25   0.69 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.5  

>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 34  KRINITFQ-IKKLEAQSDLSNYSDQIDSNELSNGTDLFACDKTSISSSTDAER 85
           KR NI  +    +++Q+  S Y+  + S+  S+G     CD   +    D +R
Sbjct: 69  KRRNILLRRTDSMDSQNSASTYNSFLSSDSASSGNVYCKCDDCLLGIVDDYQR 121


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 25  CLNITQEIYKRINITFQIKKLEAQSDLSNY 54
           C+++ +E+ K IN T+ +  L       NY
Sbjct: 463 CMDLLKELSKTINFTYSL-ALSPDGQFGNY 491


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 38  ITFQIKKLEAQSDLSNYSDQIDSNELSNGTDLFACDKTSISSST 81
           +T  + KL   +DL  Y+  +  + LS+G  ++    T   S++
Sbjct: 518 VTVNLTKLHPPADLVVYACNVVGSGLSHGNWIYPASMTIPGSNS 561


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 184 KKHNKRETTDNAQCTDSKTSTIDTKAEDHREVNIKNENIMEMKN 227
           +++N  ET       D++TST   K +   E N+   +  +MKN
Sbjct: 313 QRYNLLETIATHMGLDTRTSTSLWKDKAMIEANVAVLHSFQMKN 356


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 4/90 (4%)

Query: 3   TLQGTQESWAITGERLDSKYEK---CLNITQEIYKRINITFQIKKLEAQSDLSNYSDQID 59
           TLQ  Q    +T  ++ S Y +    LN      +  N+T  +     Q +L     Q+D
Sbjct: 469 TLQ-IQPQEQLTLSKVTSNYHEEFQSLNNAVGEMEATNVTNILSMDNTQYNLDLSLPQLD 527

Query: 60  SNELSNGTDLFACDKTSISSSTDAERPQAS 89
           S EL++     + + +S  S +D+ +P+ S
Sbjct: 528 STELADLDISLSENLSSGLSISDSTKPETS 557


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.123    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,871
Number of Sequences: 429
Number of extensions: 2122
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 261
length of database: 140,377
effective HSP length: 56
effective length of query: 205
effective length of database: 116,353
effective search space: 23852365
effective search space used: 23852365
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 43 (21.4 bits)