GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001653-TA|BGIBMGA001653-PA|IPR003604|Zinc finger,
U1-type
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    36   0.016
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    35   0.037
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    31   0.60 
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    31   0.60 
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    31   0.60 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.80 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   1.1  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    30   1.4  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    29   2.4  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    29   2.4  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   3.2  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    28   5.6  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    28   5.6  
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar...    28   5.6  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    27   7.4  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    27   9.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 372  PYVAPIFPLPMNFVPNIPL--GMYPRPAPFAIPNFPVPYVMPNYARAPGIMPNFMPFRLP 429
            P   P  P P + +P+IP   G  P PAP  IP  P P V       P +    +P    
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSG 1119

Query: 430  FPMAYSRPRLCMPPQGFWPVNFHNPPAP 457
             P    +P +  PP    PV    PP P
Sbjct: 1120 AP-PVPKPSVAAPPV---PVPSGAPPVP 1143



 Score = 27.9 bits (59), Expect = 5.6
 Identities = 26/86 (30%), Positives = 30/86 (34%), Gaps = 1/86 (1%)

Query: 375  APIFPLPMNFVPNIPLGMYPRPAPFAIPNFPVPYVMPNYARAPGIMPNFMPFRLPFPMAY 434
            AP  PLP    P IP+     P P      PVP        AP  +P      +P   A 
Sbjct: 1021 APPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVP-APSSEIPSIPAP 1079

Query: 435  SRPRLCMPPQGFWPVNFHNPPAPYFP 460
            S       P G  PV   +  AP  P
Sbjct: 1080 SGAPPVPAPSGIPPVPKPSVAAPPVP 1105



 Score = 27.5 bits (58), Expect = 7.4
 Identities = 31/93 (33%), Positives = 36/93 (38%), Gaps = 9/93 (9%)

Query: 375  APIFPLPMNF--VPNIPLGMYPRPAPFAIPNFPVPYVM--PNYARAPGIMPNFMPFR--L 428
            AP  P+P     VP   +   P PAP   P  P P V   P  A + GI P   P     
Sbjct: 1130 APPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVP 1189

Query: 429  PFPMAYSRPRLCMPPQGFWPVNFHNPPAPYFPV 461
            P P     P +  P  G  PV    PP+   PV
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPV---PPPSTAPPV 1219


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 35.1 bits (77), Expect = 0.037
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 9/95 (9%)

Query: 398 PFAIPNFP--VPYVMPNYARAPGIMPNFMPFRLPFPMAYSRPRLCMPPQ--GFWPVNFHN 453
           P  +P FP  +P  +P + R PG   NF PF  PF +    P L   P    F+P    +
Sbjct: 51  PMKVPTFPEQIPQ-LPPFDRFPGTNANFFPFGAPFMLP---PALMFGPNTVPFFPQTASS 106

Query: 454 PPAPYFPVNRAKDTNGHARSKEGEADTGDSHSEDE 488
               +    R+ + + + R+K   ++T DS +  +
Sbjct: 107 NKT-FSKRKRSSENSFNNRNKAKSSETSDSSNTSQ 140


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 567 IGRSAKYCFVCSAEVKN-SDVKEHV-DSIRHNKNLK--ECNFSIDFWKHLVRQVE 617
           + +SA  C +C  + ++   V +H+  SI HN NLK  E   S +   H VRQ E
Sbjct: 399 VWKSALICVLCERKFQSWGHVVKHITQSIMHNNNLKNHELVSSAELLMHRVRQTE 453


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 614 RQVEDNFHCGLCNLFI--PSDMLLAHLQWPTHVSNFHWAFRAKVPSA 658
           R ++ NF  G+ NLF+    + +L H+ +    SN +++  AK+ S+
Sbjct: 167 RDLDSNFLLGIYNLFLGQAQECVLGHMSFSASDSNMNYSLAAKIASS 213


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 351 QNMNHVNFSHYYVNQPTRSLRPYVAPIFP-LPMNFVPNIPL---GMYPRPAPFA-IPNFP 405
           Q   H +   Y+VN   + L+PYV  ++P +P    P + +     Y  P P A +P   
Sbjct: 166 QWQTHQSVHPYHVNNTHQYLKPYVQNVYPQMPSLNQPGLHIVNQPTYLAPVPSATVPTNS 225

Query: 406 VPYVMPNYARAPGIMP 421
           V   MP++++    +P
Sbjct: 226 VSLSMPSFSQGQKNIP 241


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 7/51 (13%)

Query: 374  VAPIFPLPMNFVPNIPL-GMYPRPA------PFAIPNFPVPYVMPNYARAP 417
            VAP+ P     V N P     P P       P A+PN PVP ++P+ A+ P
Sbjct: 1455 VAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQP 1505


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 31/120 (25%), Positives = 41/120 (34%), Gaps = 7/120 (5%)

Query: 374 VAPIFPLPMNFVPNIP-LGMYPRPAPFAIPNFPVPYV--MPNYARAPGIMPNFMPFRLPF 430
           +AP  P  M   P +P     P PAP   P  PV  +  +P       +M +    R   
Sbjct: 455 IAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELPQQDGRANLMASI---RASG 511

Query: 431 PMAYSRPRLCMPPQGFWPVNFHNPPAPYFPVNRAKDTNGHARSKEGEADTGDSHSEDEDD 490
            M   + R              NPP    P N   D    A ++  +     S  EDEDD
Sbjct: 512 GMDLLKSRKVSASPSVASTKTSNPPVEAPPSNNLMDALASALNQR-KTKVAQSDEEDEDD 570


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 22/68 (32%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 372 PYVAPIFPLPMNFVPNIPLGMYPRPAPFAIPNFPVPYVMPNYARAPGIMPNFMPFRLPFP 431
           P +AP  P PM   P     M P P     P     Y   N   + G  P    F  P P
Sbjct: 217 PQLAPSIPSPMKLSPANQQAMPPYPQMLG-PGSISSYTNSNLGPSAGFRPPTF-FSSPSP 274

Query: 432 MAYSRPRL 439
             YS P L
Sbjct: 275 QPYSGPIL 282


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/34 (41%), Positives = 16/34 (47%)

Query: 371 RPYVAPIFPLPMNFVPNIPLGMYPRPAPFAIPNF 404
           RP   P  P P+  VPN+P      P PF  P F
Sbjct: 355 RPPPPPPMPAPIYNVPNVPTVPTVSPNPFLQPTF 388


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 10/54 (18%)

Query: 370 LRPYVAPIFPLPMNFVPNIPLGMYP--------RP-APF-AIPNFPVPYVMPNY 413
           L+ ++ P F  P+ + P IP G  P        +P  PF A+P+FP    +PNY
Sbjct: 592 LQQFITPPFSYPVAYCPAIPPGSDPILNFGIQYQPFIPFTAVPSFPFNCNVPNY 645


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 36/142 (25%), Positives = 55/142 (38%), Gaps = 14/142 (9%)

Query: 364 NQPTRSLRPYVAPIFPLPMNFVPNIPLGMYPRP-APFAIPNFPVPYVMPNYARAPGIMPN 422
           N+  R   P   P    P + +   P+GMYP P +P      P+P+  PN +  P +   
Sbjct: 271 NKVLRVSIPGSQPALVTPKHKMNVPPMGMYPLPFSPLPSAAPPIPF-SPNVSSHPHMA-- 327

Query: 423 FMPFRLPFPMAYSRPRLCMPPQGFWPVNFHNPPAPYFPVNRAKDTNGHARSKEGEADTGD 482
           F+P  +P   A         P GF P +F       +P + +      + SK   A  G 
Sbjct: 328 FLPATVPTHSA---------PPGFVPYDFPITNDKMYP-SPSFQEEFPSTSKSPSATPGS 377

Query: 483 SHSEDEDDCYDKDQRIWYQDIY 504
           S++   D     D   +   IY
Sbjct: 378 SNAPVVDMHPSADSATYPTSIY 399


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/42 (26%), Positives = 23/42 (54%)

Query: 195 QLKDLKTINDARVELLKTVTSLGGFGDVDTDKTHGEIVVRPF 236
           +L+D K I   + +L + +T +G  G +D D +  ++ +  F
Sbjct: 317 ELEDTKAITPEQAKLYRHLTIVGLVGSIDNDMSSTDVTIGAF 358


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 71  SCAVCDQ-LCEANAFSEHISSEHHVRNMEKFE 101
           +C VC++      A+S H++S+ H  N+ KF+
Sbjct: 71  NCEVCNKKFYSEGAYSSHMASKKHRDNLSKFQ 102


>SPBC1604.16c |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 305 FHCAICNVFMKSNDLSDHVESLSHMLLLTKSMEKCNPGISNCFRRPQNMNHVNFSHY 361
           F C +C +++ ++   +H +S++H+L       K  P +     +P+++ +   S Y
Sbjct: 71  FACEVCQIYIPNSKKINHFKSMTHLLSSQHISNKFQPHL----LKPKSLGYRVLSQY 123


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 574 CFVCSAEVKNSD-VKEHVDSIRHNKNLKECNFSI 606
           C VC+   ++ + ++ H +S +H KNL++ N  I
Sbjct: 272 CMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEI 305


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 558 SSCYHTLVEIGRSAKYCFVCSAEVKNSDVKEHVDSIRHNKNLKECNFSI 606
           SS  H   E+  S K   +  A  +  D+K+ VD++ HNK+  EC  ++
Sbjct: 13  SSSDHKKAELSDSLKQLQLLQA-FQAGDIKQ-VDNLLHNKSKDECTHAL 59


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.137    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,464,824
Number of Sequences: 5004
Number of extensions: 151681
Number of successful extensions: 368
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 28
length of query: 771
length of database: 2,362,478
effective HSP length: 78
effective length of query: 693
effective length of database: 1,972,166
effective search space: 1366711038
effective search space used: 1366711038
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)