Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001653-TA|BGIBMGA001653-PA|IPR003604|Zinc finger,
U1-type
(771 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21829| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.010
SB_36581| Best HMM Match : HR1 (HMM E-Value=2.2) 39 0.017
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 39 0.017
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.023
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 35 0.21
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.49
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.49
SB_45391| Best HMM Match : DUF1509 (HMM E-Value=1.9) 33 0.86
SB_12656| Best HMM Match : CS (HMM E-Value=0.0018) 33 1.1
SB_27620| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 1.1
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 1.1
SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 2.0
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0) 32 2.0
SB_29528| Best HMM Match : Sterol_desat (HMM E-Value=6.4e-16) 32 2.0
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 32 2.0
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 32 2.0
SB_45731| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.5
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41) 31 3.5
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.5
SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.5
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 4.6
SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 4.6
SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08) 31 4.6
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 4.6
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 6.1
SB_51620| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 6.1
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 6.1
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33) 30 8.1
SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44) 30 8.1
SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 8.1
SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 8.1
SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 8.1
>SB_21829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 498
Score = 39.5 bits (88), Expect = 0.010
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 343 ISNCFRRPQNMNHVNFSHYYVNQ----PTRSLRPYVAPIFPLPMNFVPNIPLGMYPRPAP 398
+S + + +N+N + ++ PT PY+ P F P P Y P+
Sbjct: 193 VSRIYSKNKNVNVASLLPHFTQPNPTAPTYVALPYITPTFVAPPYVTPPYVTPPYVSPSY 252
Query: 399 FAIPNFPVPYVMPNYARAPGIMPNFM 424
A P PYV P + P + P F+
Sbjct: 253 VAPPYVAPPYVAPTFVAPPYVAPTFV 278
Score = 36.7 bits (81), Expect = 0.070
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 366 PTRSLRPYVAPIFPLPMNFVPNIPLGMYPRPAPFAIPNFPVP-YVMPNYARAPGIMPNFM 424
PT PYV P + P P+ Y P P+ P F P YV P + P + P ++
Sbjct: 230 PTFVAPPYVTPPYVTPPYVSPSYVAPPYVAP-PYVAPTFVAPPYVAPTFVAPPYVTPPYV 288
Query: 425 PFRLPFPMAYSRPRLCMPP 443
P Y P PP
Sbjct: 289 APSYVAP-TYVAPSYVAPP 306
Score = 35.9 bits (79), Expect = 0.12
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 366 PTRSLRPYVAPIFPLPMNFVPNIPLGMYPRPAPFAIPNFPVPYVMPNYARAPGIMPNF-- 423
P+ PYVAP++ P + +Y P + P PYV P Y P + P +
Sbjct: 300 PSYVAPPYVAPLYVAPSYVAQPYVVQLYVAPPYVSPPYVSPPYVSPPYVSPPYVSPPYVT 359
Query: 424 MPF-RLPF-PMAYSRPRLCMPPQGFWPVNFHNPPAP 457
+P+ LP+ + Y PP P + PP P
Sbjct: 360 LPYVTLPYLTLLYVATPYVTPPYVAPP--YVAPPYP 393
Score = 33.9 bits (74), Expect = 0.49
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 362 YVNQPTRSLRPYVAPIFPLPMNFVPNIPLGMYPRPAPFAIPNFPVPYVMPNYARAPGIMP 421
YV P S YVAP + P P Y P A P PYV P+Y + P
Sbjct: 242 YVTPPYVS-PSYVAPPYVAPPYVAPTFVAPPYVAPTFVAPPYVTPPYVAPSYVAPTYVAP 300
Query: 422 NFM--PFRLPFPMAYS 435
+++ P+ P +A S
Sbjct: 301 SYVAPPYVAPLYVAPS 316
Score = 33.1 bits (72), Expect = 0.86
Identities = 20/70 (28%), Positives = 28/70 (40%)
Query: 373 YVAPIFPLPMNFVPNIPLGMYPRPAPFAIPNFPVPYVMPNYARAPGIMPNFMPFRLPFPM 432
YVAP + P P +Y P+ A P YV P Y P + P ++ P
Sbjct: 292 YVAPTYVAPSYVAPPYVAPLYVAPSYVAQPYVVQLYVAPPYVSPPYVSPPYVSPPYVSPP 351
Query: 433 AYSRPRLCMP 442
S P + +P
Sbjct: 352 YVSPPYVTLP 361
Score = 31.9 bits (69), Expect = 2.0
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 366 PTRSLRPYVAPIFPLPMNFVPNIPLGMYPRP---AP-FAIPNFPVP-YVMPNYARAPGIM 420
PT PYVAP F P P Y P AP + P + P YV P+Y P ++
Sbjct: 265 PTFVAPPYVAPTFVAPPYVTPPYVAPSYVAPTYVAPSYVAPPYVAPLYVAPSYVAQPYVV 324
Query: 421 PNFM--PFRLPFPMAYSRPRLCMPP 443
++ P+ P Y P PP
Sbjct: 325 QLYVAPPYVSP---PYVSPPYVSPP 346
Score = 31.5 bits (68), Expect = 2.6
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 372 PYVAPIFPLPMNFVPNIPLGMYPRPAPFAIPNFPVPYVMPNYARAPGIMPNFM--PFRLP 429
PYVAP + P P+ Y P A PYV+ Y P + P ++ P+ P
Sbjct: 286 PYVAPSYVAPTYVAPSYVAPPYVAPLYVAPSYVAQPYVVQLYVAPPYVSPPYVSPPYVSP 345
Query: 430 FPMAYSRPRLCMPP 443
Y P PP
Sbjct: 346 ---PYVSPPYVSPP 356
>SB_36581| Best HMM Match : HR1 (HMM E-Value=2.2)
Length = 760
Score = 38.7 bits (86), Expect = 0.017
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 372 PYVAPIFPLPMNFVPNIPLGMYPRPAPFAIPNF----PVPYVMPNYARAPGIMPNFMPFR 427
PY P + P +P +YP P P+ +P + P+PY +P Y + P +P+
Sbjct: 506 PYGVPEYLYPCPIPYGVPEYLYPCPIPYDVPEYLYPRPIPYDVPEY-----LYPCSIPYD 560
Query: 428 LPFPMAYSRPRLCMPPQGFWP 448
+P Y P C P+ +P
Sbjct: 561 VP-EYLYPCPIPCGVPEYLYP 580
Score = 36.7 bits (81), Expect = 0.070
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 372 PYVAPIFPLPMNFVPNIPLGMYPRPAPFAIPNF----PVPYVMPNYARAPGIMPNFMPFR 427
PY P + P ++P +YPRP P+ +P + +PY +P Y I +
Sbjct: 519 PYGVPEYLYPCPIPYDVPEYLYPRPIPYDVPEYLYPCSIPYDVPEYLYPCPIPCGVPEYL 578
Query: 428 LPFPMAYSRPRLCMP 442
P P+ P P
Sbjct: 579 YPCPIPCGVPEYLYP 593
Score = 35.9 bits (79), Expect = 0.12
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 377 IFPLPMNFVPNIPLGMYPRPAPFAIPNF----PVPYVMPNYARAPGIMPNFMPFRLPFPM 432
++P P+ + +P +YP P P+ +P + P+PY +P Y I + + P +
Sbjct: 500 LYPCPIPY--GVPEYLYPCPIPYGVPEYLYPCPIPYDVPEYLYPRPIPYDVPEYLYPCSI 557
Query: 433 AYSRPRLCMP 442
Y P P
Sbjct: 558 PYDVPEYLYP 567
Score = 35.5 bits (78), Expect = 0.16
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 388 IPLGMYPRPAPFAIPNF----PVPYVMPNYARAPGIMPNFMPFRLPFPMAYSRPRLCMP 442
+P +YP P P+ +P + P+PY +P Y I + + P P+ Y P P
Sbjct: 496 VPEYLYPCPIPYGVPEYLYPCPIPYGVPEYLYPCPIPYDVPEYLYPRPIPYDVPEYLYP 554
Score = 33.5 bits (73), Expect = 0.65
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 372 PYVAPIFPLPMNFVPNIPLGMYPRPAPFAIPNF----PVPYVMPNYARAPGIMPNFMPFR 427
PY P + P ++P +YP P+ +P + P+P +P Y I +
Sbjct: 532 PYDVPEYLYPRPIPYDVPEYLYPCSIPYDVPEYLYPCPIPCGVPEYLYPCPIPCGVPEYL 591
Query: 428 LPFPMAYSRPRLCMP 442
P P+ Y P P
Sbjct: 592 YPCPIRYGVPEYLYP 606
Score = 33.5 bits (73), Expect = 0.65
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 377 IFPLPMNFVPNIPLGMYPRPAPFAIPNF----PVPYVMPNYARAPGIMPNFMPFRLPFPM 432
++P P+ + +P +YP P P +P + P+P +P Y I + P P+
Sbjct: 591 LYPCPIRY--GVPEYLYPCPIPCGVPEYLYPCPIPCGVPEYLYPCPIPCGVPEYLYPCPI 648
Query: 433 AYSRPRLCMP 442
Y P P
Sbjct: 649 PYGVPEYLYP 658
Score = 31.1 bits (67), Expect = 3.5
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 373 YVAPIFPLPMNFVPNIPLGMYPRPAPFAIPNF----PVPYVMPNYARAPGIMPNFMP-FR 427
Y P + P +P +YP P P +P + P+P +P Y P +P +P +
Sbjct: 598 YGVPEYLYPCPIPCGVPEYLYPCPIPCGVPEYLYPCPIPCGVPEYL-YPCPIPYGVPEYL 656
Query: 428 LPFPMAYSRPR 438
P P+ Y + R
Sbjct: 657 YPCPIPYDQNR 667
Score = 29.9 bits (64), Expect = 8.1
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 372 PYVAPIFPLPMNFVPNIPLGMYPRPAPFAIPNF----PVPYVMPNY 413
P P + P +P +YP P P +P + P+PY +P Y
Sbjct: 610 PCGVPEYLYPCPIPCGVPEYLYPCPIPCGVPEYLYPCPIPYGVPEY 655
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 38.7 bits (86), Expect = 0.017
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 543 IYVYVQLKKCFYKIKSSCY---HTLVEIGRSAKYCFVCSAEVKNSDVKEHVDSIRHNKNL 599
+ +YV C + ++SC H V + C C+ SD+ HV ++ L
Sbjct: 468 VKIYV-CDHCDKEFETSCQLGSHKKVAHDQETAICVHCNGRFPASDLLSHVKMFHRDEKL 526
Query: 600 KECNFSIDFW-----KHLVRQVED--NFHCGLCNLFIPSDMLLAH 637
+CN+ + K + QV + F C CN IPS + H
Sbjct: 527 VKCNYCKKIFTKYGMKEHIEQVHNKPGFKCAQCNQMIPSRQMRCH 571
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 38.3 bits (85), Expect = 0.023
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 362 YVNQPTRSLRPYVAPIFPLPMNFVPNIPLGMYPRPAPFAIPNFPVPYVMPNYARAPGIMP 421
+ + P + P+ P P+ + + P+G P P P P P +MP PG P
Sbjct: 211 FADAPPIQTSTSLPPMIP-PVGMLGHPPMGAPPPPHSMPPPGMPPPGMMP----PPGFPP 265
Query: 422 NFMPFRLPFPMAYSRPRLCMPPQGFWPVNFHNPPAP 457
MP P P MPP G P N PP P
Sbjct: 266 MGMPGMGGMPPPGMPPP--MPPGGM-PPNMEQPPPP 298
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 35.1 bits (77), Expect = 0.21
Identities = 34/104 (32%), Positives = 41/104 (39%), Gaps = 12/104 (11%)
Query: 366 PTRSLRPYVAPIFPLPMNFV--PNIPLGMYPRPAPFAIPNFPVPYVMPNYARAPGIMPN- 422
P L P++ P P P + PN P M P P A PN +P PN P PN
Sbjct: 221 PPAPLHPHIPPAPPNPSKAIATPNPP--MPETPLPPATPNPFIPPASPN-PSIPPAPPNP 277
Query: 423 --FMPFRLPFPMAYSRPRLCMPPQGFW----PVNFHNPPAPYFP 460
P P+A P + P + P N H PPAP P
Sbjct: 278 SIPAPPNPSIPLAPPNPYIPPAPPNLFIPSAPPNPHIPPAPPNP 321
Score = 34.3 bits (75), Expect = 0.37
Identities = 32/85 (37%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 376 PIFPLPMNFVPNIPLGMYPRP-APFAIPNFPVPYVMPNYARAPGIMPN-FMPFRLPFP-M 432
P P P N P+IPL P P P A PN +P PN P PN ++P P P +
Sbjct: 277 PSIPAPPN--PSIPLAP-PNPYIPPAPPNLFIPSAPPN-PHIPPAPPNPYIPTAPPNPSI 332
Query: 433 AYSRPRLCMPPQGFWPVNFHNPPAP 457
+ P +PP P N PPAP
Sbjct: 333 PPAPPNPSIPPA---PPNPSIPPAP 354
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 33.9 bits (74), Expect = 0.49
Identities = 35/91 (38%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 372 PYVAPIFPLPMNFVPNIPLGMYPRP--APFAIPNFPVPYVMPNYARAPGIMPNFMPFRLP 429
PY P +P P + P P YP P AP+ P P PY P A P PN P+ P
Sbjct: 98 PY--PPYPPPPPYPPP-PNPPYPPPPNAPYPPPPNP-PYPPPPNAPYPP-SPN-APYPPP 151
Query: 430 FPMAYSRPRLCMPPQGFWPVNFHNPPAPYFP 460
Y P L PP P N PP PY P
Sbjct: 152 PNPPYPPP-LYPPPPNPPPPNAPYPPPPYPP 181
Score = 30.7 bits (66), Expect = 4.6
Identities = 30/88 (34%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 372 PYV-APIFPLPMNFVPNIPLGMYPRPAPFAIPNFPVPYVMPNYARAPGIMPNFMPFRLPF 430
PY +P P P P P +YP P PN PY P Y P P P P+
Sbjct: 139 PYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPN--APYPPPPYPPPPN-PPYPPPPNPPY 195
Query: 431 PMAYSRPRLCMP-PQGFWPVNFHNPPAP 457
P + P P P P N NPP P
Sbjct: 196 PPPPNAPNPPPPNPPYPPPPNAPNPPYP 223
Score = 30.3 bits (65), Expect = 6.1
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 381 PMNFVPN-----IPLGMYPRPAPFAIPNFPVPYVMPNYARAPGIMPNF-MPFRLPFPMAY 434
P NF PN P YP P P+ P P PN P P + P P+P +
Sbjct: 85 PTNFSPNPPYPPPPYPPYPPPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSP 144
Query: 435 SRPRLCMPPQGFWPVNFHNPPAP 457
+ P P + P + PP P
Sbjct: 145 NAPYPPPPNPPYPPPLYPPPPNP 167
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 33.9 bits (74), Expect = 0.49
Identities = 18/50 (36%), Positives = 22/50 (44%)
Query: 366 PTRSLRPYVAPIFPLPMNFVPNIPLGMYPRPAPFAIPNFPVPYVMPNYAR 415
P ++ P P P VPN P +YP PF + P MPNY R
Sbjct: 407 PPTMIQTLPPPSVPPPPIGVPNRPSVLYPNNNPFQRSGYNGPGFMPNYNR 456
>SB_45391| Best HMM Match : DUF1509 (HMM E-Value=1.9)
Length = 402
Score = 33.1 bits (72), Expect = 0.86
Identities = 27/105 (25%), Positives = 36/105 (34%), Gaps = 10/105 (9%)
Query: 389 PLGMYPRPAPFAIPNFPVPYVMPNYARAPGIMP---NFMPFRLPFPMAYSRPRLCMPPQG 445
P +YP P +P + PG P + + P P P PP
Sbjct: 190 PAPLYPLAQQQLFPGYPYSNTVARSQNRPGAPPLLNSLLSGNRPTPQTEDNPG---PP-- 244
Query: 446 FWPVNFHNPPAPYFPVNRAKDTNGHARSKEGEADTGDSHSEDEDD 490
PV NPP PY P R + A + + G + EDD
Sbjct: 245 --PVYPPNPPEPYSPYGRRGRKHPDADDPPDDEEEGAAPDGSEDD 287
>SB_12656| Best HMM Match : CS (HMM E-Value=0.0018)
Length = 277
Score = 32.7 bits (71), Expect = 1.1
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 17/116 (14%)
Query: 362 YVNQPTRSLRPYVAPIFPLPMNFVPNIPLGMYPRPAPF---AIPNFPVP---YVMPNYAR 415
Y++ P+ L P P +P + ++P ++P P P +P +P Y+ P +
Sbjct: 121 YIHPPS-PLHPSPLPATSIPPSRYIHLPFPIHPSPFPLHPSPLPATSIPPSRYIHPPFPL 179
Query: 416 APGIMP--NFMPFRL---PFPMAYS-RPRLCMPPQGFWPVNFHNPPAPYFPVNRAK 465
P +P + P R PFP+ S P +PP + H PP Y V+ +
Sbjct: 180 HPSPLPATSIPPSRYIHPPFPLHPSPLPATSIPPSRY----IHPPPFRYIQVDEPR 231
Score = 32.3 bits (70), Expect = 1.5
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 366 PTRSLRPYVAPIFPLPMNFVPNIPLGMYPRPAP-FAIPNFPVPYVMPNYARAPGIMP--N 422
P +L P P +P + ++P ++P P P +IP P Y+ P P +P +
Sbjct: 80 PRPTLHPSPLPATSIPPSRYIHLPFPLHPSPLPATSIP--PSRYIHPPSPLHPSPLPATS 137
Query: 423 FMPFR---LPFPMAYSRPRL---CMPPQGFWPVNFHNPPAPYFP 460
P R LPFP+ S L +P P + +PP P P
Sbjct: 138 IPPSRYIHLPFPIHPSPFPLHPSPLPATSIPPSRYIHPPFPLHP 181
>SB_27620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 32.7 bits (71), Expect = 1.1
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 362 YVNQPTRSLRP-YVA-PIFPLPMNFVPNIPLGMYPRPAPFAIPNFPVP-YVMPNYARAPG 418
YV PT + P YV P + +P +P + Y P + +P + +P Y+MP Y
Sbjct: 129 YVMMPTYVMMPTYVMMPTYMMPTYMMPTYMMPTYMMPT-YMMPTYMMPTYMMPTYMMPTY 187
Query: 419 IMP 421
+MP
Sbjct: 188 MMP 190
Score = 31.5 bits (68), Expect = 2.6
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 362 YVNQPTRSLRP-YVA-PIFPL-PMNFVPNIPLGMYPRPAPFAIPNFPVP-YVMPNYARAP 417
YV PT + P YV P + + P +P + Y P + +P + +P Y+MP Y
Sbjct: 123 YVMMPTYVMMPTYVMMPTYVMMPTYMMPTYMMPTYMMPT-YMMPTYMMPTYMMPTYMMPT 181
Query: 418 GIMPNFM 424
+MP +M
Sbjct: 182 YMMPTYM 188
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 32.7 bits (71), Expect = 1.1
Identities = 31/86 (36%), Positives = 36/86 (41%), Gaps = 18/86 (20%)
Query: 372 PYVAPIFPLP---MNFVPNIPLGMYPRPAPFAIPNFPVPYVMPNYARAPGIMPNFMPFRL 428
P + P P P M +P P+GMYP P F P F P P + R P P +
Sbjct: 452 PQLPPNLPPPPGGMRGMPPPPMGMYPPPRGFPPPPFGPP---PPFYRGPP-----PPRGM 503
Query: 429 PFPMAYSRPRLCMPPQGFWPVNFHNP 454
P P PR MP QG P H P
Sbjct: 504 PPP-----PRQRMPSQG--PPQVHYP 522
>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2346
Score = 31.9 bits (69), Expect = 2.0
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 381 PMNFVPNIPLGMYPRPAPFAIPNFPVP--YVMPNYARAPGIMPNF-MPFRLPFPMAYS 435
P N+VP L + P P +P P+P + P ++R P P P R+P P S
Sbjct: 1324 PANYVPPWELPLPPSGLPLPLPRLPLPPLRLPPPHSRLPLPPPKLPPPSRIPLPSKLS 1381
>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 6074
Score = 31.9 bits (69), Expect = 2.0
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 59 QWNTLAVVGRQLSCAVCDQLCEANAFSEHISSEHHVRNMEKFEPLEEFGPTITRKIRQRY 118
+W+TL VV R S AV + ++ FS IS E +E E GPT+TR+I +Y
Sbjct: 967 RWDTLTVVLRA-SSAVGFSVLDSTTFSVTISEE-----VESPALCESSGPTLTREISPKY 1020
>SB_29528| Best HMM Match : Sterol_desat (HMM E-Value=6.4e-16)
Length = 368
Score = 31.9 bits (69), Expect = 2.0
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 638 LQWPTHVSNFH-WAFRAKVPSAEQGTPDHQVE 668
L WP NFH W R K P+A T H VE
Sbjct: 185 LHWPFFYKNFHKWHHRYKAPTAFSATAMHPVE 216
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 31.9 bits (69), Expect = 2.0
Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 6/105 (5%)
Query: 394 PRPAPFAIPNFPVPYVMPNYARAPGIMPNFMPFRLPFPMAYSRPRLCMPPQG-FWPVNFH 452
P PF P P P + P P +MP +P LP + P L M P+ P
Sbjct: 2592 PMQPPFFGPQLPPPDMFP-----PQMMPPMVPMMLPPMLPLPPPGLPMQPEAPVQPPPLP 2646
Query: 453 NPPAPYFPVNRAKDTNGHARSKEGEADTGDSHSEDEDDCYDKDQR 497
P P+ PV + + S +T S+ +D + R
Sbjct: 2647 PPGGPFPPVAADQGDDEDRPSVSINVETSKSNIPKNNDIVNYHDR 2691
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 31.9 bits (69), Expect = 2.0
Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 9/113 (7%)
Query: 366 PTRSLRPYVAPIFPLPMNFVPNIPLGMYPRPAPFAIPNFPVPYVMPNYARAPGIMPNFMP 425
P+ P P +P ++ P PL YP P+P P P Y P+ R P P + P
Sbjct: 294 PSPPRYPPSPPRYPPSLHRYPQSPLR-YP-PSPIRYPPLPSRY-PPSPPRYPSSHPRYPP 350
Query: 426 F---RLPFPMAY--SRPRLCMPPQGFWPVNFHNPPA-PYFPVNRAKDTNGHAR 472
P P Y S PR P + P PP+ +P + + H R
Sbjct: 351 SPPRYPPSPPRYPSSHPRYPPSPLRYLPSPIRYPPSHSRYPSSHPRYPPSHLR 403
>SB_45731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 31.1 bits (67), Expect = 3.5
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 427 RLPFPMA----YSRPRLCMPPQGFWPVNFHNPPAPYFPVNRAKDTNGHARSKEGEADTGD 482
R P+P+ YS P + PP+ ++P + Y P N + + G D
Sbjct: 102 RQPYPVHNHPNYSVPLVGFPPRTYYPASLATGTCDYDPHMELGSYNTYGETSLGGLSGDD 161
Query: 483 SHSEDEDDCYDKDQR 497
+S+ + +D D R
Sbjct: 162 DYSDFQSSRFDTDSR 176
>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
Length = 638
Score = 31.1 bits (67), Expect = 3.5
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 366 PTRSLRPYVAPIFPLPMNFVPNIPLGMY---PRPAPFAIPNFPVPYVMPNYARAPG-IMP 421
P SLR A + PLP + P +P P PAP A+P P+P +P +PG P
Sbjct: 437 PLPSLRASAATLPPLPSDEPPPLPPDEEKPPPPPAP-ALPPLPLPPELPG---SPGDSPP 492
Query: 422 NFMPFRLPFPMAYSR-PRLCMPP 443
P + P P +S P L P
Sbjct: 493 ATSPKQPPLPPKHSNGPPLRQTP 515
>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 31.1 bits (67), Expect = 3.5
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 378 FPLPMNFVPNIPLGMYPRPAPFAIPN----FPVPYVMPNYARAPGIMPNFMPFRLPFPMA 433
FP+P++ P I P P P+ +P+ P+PY +P R P ++ F +P+
Sbjct: 459 FPIPVHSPPQIE--KVPIPFPYPVPSPPQIKPMPYPVPVPVRQPPMIQRFY-----YPVP 511
Query: 434 YSRP 437
SRP
Sbjct: 512 VSRP 515
>SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 31.1 bits (67), Expect = 3.5
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 361 YYVNQPTRSLRP--YVAPIFPLPMNFVPNIPLGMYPRP----APFAIPNFPVPYVMPNYA 414
Y + P + RP Y AP++ PL + RP AP +P+ P+ P+
Sbjct: 133 YLPSAPLLTERPSTYRAPLYLPSAPSTYRAPLLLTERPSTYRAPLYLPSTPLLTKRPSNY 192
Query: 415 RAPGIMPN--FMPFRLPFP 431
RAP +P+ + +R PFP
Sbjct: 193 RAPLYLPSTPLLTYRAPFP 211
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 30.7 bits (66), Expect = 4.6
Identities = 40/149 (26%), Positives = 60/149 (40%), Gaps = 14/149 (9%)
Query: 341 PGISNCFRRPQNMNHVNFSHYYVNQPT--RSLRPYVAPIFPLPMNFVPNIP-LGMYPRPA 397
P N F +PQ + V T R + VA + P P P LG P+P+
Sbjct: 1626 PKERNIFTKPQRKTESIDTTPEVPTTTNAREISHEVANLTNSPSEVRPQSPALGSIPQPS 1685
Query: 398 PFAIPNFPVPYVM-PNYARAPGIM------PNFMPFRLPFPMAYSRPRLCMPPQGFWPVN 450
+ VP V A +PG + P F+P +P P+ S P M PQG P
Sbjct: 1686 TPVVFT-TVPQVSGAAMAMSPGTVSPQVHAPAFVP--IPVPVG-SSPLWYMTPQGMVPYQ 1741
Query: 451 FHNPPAPYFPVNRAKDTNGHARSKEGEAD 479
P + PV+ + + + S+ G+ +
Sbjct: 1742 QIPPTGFFMPVDASVGSVASSESEMGDVE 1770
>SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1172
Score = 30.7 bits (66), Expect = 4.6
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 229 GEIVVRPFDVG--LVITRMAYNTIVVKEKAVCRFCDLEFDGKDAMGHVNEAAEHNATLTV 286
G+I+VR ++G + R ++ V K CD + G + N +E LT
Sbjct: 712 GDIIVREGELGTEMYFLREGVVSVTVGGKHANELCDGAYFGATVTRNYNNTSETYVGLTE 771
Query: 287 NFFLGEYRN 295
N F YRN
Sbjct: 772 NEFKTRYRN 780
>SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08)
Length = 718
Score = 30.7 bits (66), Expect = 4.6
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 377 IFPLPMNFVPN-IPLGMYPRPAPFAIPNFPVPYVMPNY 413
+ P+P F+ +PL + P PF + +PVP+++ Y
Sbjct: 530 LHPVPFMFITYPVPLMVITYPVPFMVITYPVPFMVITY 567
Score = 29.9 bits (64), Expect = 8.1
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 372 PYVAPIFPLPMNFVPN-IPLGMYPRPAPFAIPNFPVPYVMPNY 413
P++ +P+P+ + +P + P PF + +PVP+++ Y
Sbjct: 534 PFMFITYPVPLMVITYPVPFMVITYPVPFMVITYPVPFMVITY 576
>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 30.7 bits (66), Expect = 4.6
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 380 LPMNFVPNIPLGMYPRPAPFAIPNFPVPYVMPNYARAPGIMPNFMPFRLPFPMAYSRPRL 439
LP+ N G+ P P+ + P P + P P P F P +P P A P
Sbjct: 725 LPIYGYSNGEAGI-PSPSEVTTKSPPAPPLPPKVTPKPPAPPQFAP--VPPPCAPIPPMP 781
Query: 440 CMPPQGFWPVNF----HNPPAP 457
C P P F H PPAP
Sbjct: 782 CSAPLPPAPAPFSAAPHLPPAP 803
>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1278
Score = 30.3 bits (65), Expect = 6.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 461 VNRAKDTNGHARSKEGEADTGDSHSEDEDDCYDKDQRIWYQ 501
+NR +D H R KE + + G + DC D QR+ ++
Sbjct: 837 INRQEDKRPHKRPKEKDLNAGVIQLGEHPDCADDVQRLCHE 877
>SB_51620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 451
Score = 30.3 bits (65), Expect = 6.1
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 396 PAPFAIPNFPVPYVMP-NYARAPGIMPNFMPFRLPFPMAYSRP 437
PA A PN PVP +P A N MP +P P S P
Sbjct: 248 PAAIANPNIPVPSALPVPRALTRTTAQNTMPISIPTPAIVSSP 290
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 30.3 bits (65), Expect = 6.1
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 417 PGIMPNFMPFRLPFPMAYSRPRLCMPPQGFWPVNFHNPPAPYFPVNRAK 465
PGI P F P P M +P L +G PV PP P PVN +K
Sbjct: 373 PGIRPRFRPHGPPARMGLPQPLLENGNRGV-PV----PPQPQLPVNTSK 416
>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
Length = 693
Score = 29.9 bits (64), Expect = 8.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 394 PRPAPFAIPNFPVPYVMPNYARAPGIMPNFMPFRLP 429
P PA +A+P P+P P P F+P LP
Sbjct: 49 PPPAMYAVPGMPMPPAYPGMPTYPPQPMQFLPGTLP 84
>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
Length = 2581
Score = 29.9 bits (64), Expect = 8.1
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 397 APFAIPNFPVPYVMPNYARAPGIMPNFMPFRLPFPMAYSRP-RLCMPPQGFWPVN----- 450
+P A + VP ++P + APGI P P + + RP RL PQ VN
Sbjct: 382 SPQATEPYVVPNIVPPHQPAPGIPP--QPMKEGNSDHHGRPQRLRQAPQRLTYVNPGTPV 439
Query: 451 FHNPPAPY 458
+ NP APY
Sbjct: 440 YMNPIAPY 447
>SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2141
Score = 29.9 bits (64), Expect = 8.1
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 439 LCMPPQGFWPVNFHNPPAP---YFPVNRAKDTNGHARSKEGEADTGDSHSEDEDDCYDKD 495
+C+ F+ + PP Y P + D + +G+ D GD +D+DD D D
Sbjct: 2035 MCLVVDDFYQRTYSLPPPENHGYGPGDDDDDDDDDDDDDDGDGDDGDGDDDDDDDDDDDD 2094
>SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 29.9 bits (64), Expect = 8.1
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 365 QPTRSLRPYVAPIFPLPMNFVPNIPLGMYPRPAPFAIPNFPVPYVMPNYARAPGIMPNFM 424
QPT+ RPY P P + +Y R PF P P P P Y P I P+
Sbjct: 158 QPTQGFRPYPGP--------SPVLSPQVY-RGYPFQYPGTPPP---PMYPAFPPIFPSSP 205
Query: 425 PFRLPFPMAYSRPRLCMPP 443
P P S R+C P
Sbjct: 206 PPEYPGLPVSSPGRVCNRP 224
>SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1933
Score = 29.9 bits (64), Expect = 8.1
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 364 NQPTRSL-RPYVAPIFPLPMNFVPNIPLGMYPR----PAPFAIPNFPVPYVMPNYARAPG 418
+QP R +P P MNF+ IPLG++P P P+A P V M + +A
Sbjct: 1534 SQPLRQQPQPPSPSSIPTNMNFLQQIPLGVHPSYPLPPPPYATPEQYVEQQM--HQQAHQ 1591
Query: 419 IMPNF 423
+M N+
Sbjct: 1592 MMGNY 1596
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.322 0.137 0.434
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,822,690
Number of Sequences: 59808
Number of extensions: 1151063
Number of successful extensions: 3723
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 3627
Number of HSP's gapped (non-prelim): 84
length of query: 771
length of database: 16,821,457
effective HSP length: 88
effective length of query: 683
effective length of database: 11,558,353
effective search space: 7894355099
effective search space used: 7894355099
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)
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