Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001653-TA|BGIBMGA001653-PA|IPR003604|Zinc finger,
U1-type
(771 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 44 5e-04
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 36 0.14
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 36 0.14
U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical pr... 34 0.33
AF067209-1|AAC16982.2| 553|Caenorhabditis elegans Warthog (hedg... 33 0.76
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 33 1.0
U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical pr... 33 1.0
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 33 1.0
Z82088-2|CAB05001.1| 705|Caenorhabditis elegans Hypothetical pr... 32 1.3
Z81490-4|CAB04016.1| 705|Caenorhabditis elegans Hypothetical pr... 32 1.3
Z70205-9|CAA94122.2| 887|Caenorhabditis elegans Hypothetical pr... 32 1.8
Z68003-5|CAA91979.2| 887|Caenorhabditis elegans Hypothetical pr... 32 1.8
U41033-6|AAA82378.1| 859|Caenorhabditis elegans Hypothetical pr... 32 1.8
U29097-5|AAA68413.1| 222|Caenorhabditis elegans Hypothetical pr... 32 1.8
U21310-2|AAA62521.1| 322|Caenorhabditis elegans T box family pr... 32 1.8
Z82088-3|CAF32230.1| 978|Caenorhabditis elegans Hypothetical pr... 31 2.3
Z82088-1|CAB05000.2| 901|Caenorhabditis elegans Hypothetical pr... 31 2.3
Z81490-5|CAF32231.1| 978|Caenorhabditis elegans Hypothetical pr... 31 2.3
Z81490-3|CAB04015.2| 901|Caenorhabditis elegans Hypothetical pr... 31 2.3
AJ303082-1|CAC19896.1| 901|Caenorhabditis elegans PMR1 protein ... 31 2.3
AJ303081-1|CAC19895.1| 901|Caenorhabditis elegans PMR1 protein ... 31 2.3
U29377-4|AAA68712.1| 412|Caenorhabditis elegans Hypothetical pr... 31 3.1
Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical p... 31 4.1
Z98877-15|CAB63407.3| 572|Caenorhabditis elegans Hypothetical p... 31 4.1
AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical ... 31 4.1
Z46934-6|CAA87045.3| 371|Caenorhabditis elegans Hypothetical pr... 30 5.4
U41534-6|AAB47598.1| 375|Caenorhabditis elegans Hypothetical pr... 30 5.4
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 30 5.4
U28409-4|AAC46590.2| 394|Caenorhabditis elegans Saposin-like pr... 30 5.4
AL132898-10|CAC14415.1| 390|Caenorhabditis elegans Hypothetical... 30 5.4
Z81043-7|CAB02804.2| 550|Caenorhabditis elegans Hypothetical pr... 30 7.1
U61237-1|AAB17542.1| 550|Caenorhabditis elegans M89 protein. 30 7.1
AL023813-2|CAA19424.2| 550|Caenorhabditis elegans Hypothetical ... 30 7.1
AF101315-5|AAM34816.1| 457|Caenorhabditis elegans Hypothetical ... 30 7.1
Z81077-15|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p... 29 9.4
Z75952-6|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr... 29 9.4
AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical ... 29 9.4
AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical ... 29 9.4
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 43.6 bits (98), Expect = 5e-04
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 366 PTRSLRPYVAP-IFPLPMNFVPNIPLGMYPRPAPFAIPN-FPVPYVMPNYARAPGIMPNF 423
P +P+ P +FP PM F +P P+ PF P FP P MP + P P
Sbjct: 70 PKHKPKPFPKPMLFPKPMPFPKPMPKSK-PKSEPFPNPMPFPKPKPMPKHKPKPFPKPML 128
Query: 424 M--PFRLPFPMAYSRPRLCMPPQGF-WPVNFHNPPAPYFP 460
P +P PM + +P L P F P+ P + FP
Sbjct: 129 FPKPMPIPKPMPFPKPMLFPKPMPFPKPMPKSKPKSEPFP 168
Score = 40.3 bits (90), Expect = 0.005
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 372 PYVAP-IFPLPMNFVPNIPLGMYPRPAPFAIPNFPVPYVMPNYARAPGIMPNFMPFRLPF 430
P+ P +FP PM F +P P+ PF P P P MP P MP P P
Sbjct: 140 PFPKPMLFPKPMPFPKPMPKSK-PKSEPFPNP-MPFPKPMPKPKPKPKPMPKHKPKPFPK 197
Query: 431 PMAYSRPRLCMPPQGF 446
PM + +P P F
Sbjct: 198 PMLFPKPMPIPKPMPF 213
Score = 39.1 bits (87), Expect = 0.012
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 366 PTRSLRPYVAP-IFPLPMNFVPNIPLGMYPRPAPFAIPNF-PVPYVMPNYARAPGIMPNF 423
P +P+ P +FP PM +P +P+P P +P P P+ P P +P
Sbjct: 188 PKHKPKPFPKPMLFPKPMPIPKPMP---FPKPMPKPMPKHKPKPFPKPMLFPKPMPIPKP 244
Query: 424 MPFRLPFPMAYSRPRLCMPPQ 444
MPF P P +P+ P+
Sbjct: 245 MPFPKPMPKPKPKPKPMPKPK 265
Score = 37.5 bits (83), Expect = 0.035
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 366 PTRSLRPYVAP-IFPLPMNFVPNIPLGMYPRPAPFAIPNFPVPYVMPNYARAPGIMPNFM 424
P +P+ P +FP PM P +P+P F P P P MP PN M
Sbjct: 52 PKHKPKPFPKPMLFPKPM---PKHKPKPFPKPMLFPKP-MPFPKPMPKSKPKSEPFPNPM 107
Query: 425 PFRLPFPMAYSRPRLCMPPQGF 446
PF P PM +P+ P F
Sbjct: 108 PFPKPKPMPKHKPKPFPKPMLF 129
Score = 37.1 bits (82), Expect = 0.047
Identities = 34/102 (33%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 366 PTRSLRPYVAPIFPLPMNFVPNIPLGMYP-RPAPFAIPN-FPVPYVMPNYARAPGIMPNF 423
P L P PI P PM F +P M +P PF P FP P +P P MP
Sbjct: 196 PKPMLFPKPMPI-PKPMPFPKPMPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPK- 253
Query: 424 MPFRLPFPMAYSRPRLCMPPQGFWPVNFHNPPAPYFPVNRAK 465
P P PM +P+L + P+ P+ F P P + K
Sbjct: 254 -PKPKPKPMPKPKPKLKLKPK---PMPFPKPKPKLKPKTKPK 291
Score = 33.5 bits (73), Expect = 0.58
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 394 PRPAPFAIPNFPVPYVMPNYARAPGIMPNFMPFRLPFPMAYSRPRLCMPPQGF-WPVNFH 452
P+ PF P P P MP P MP P P PM + +P P+ F P+ F
Sbjct: 26 PKSEPFPSP-MPFPKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPKHKPKPFPKPMLFP 84
Query: 453 NP-PAPYFPVNRAK 465
P P P P+ ++K
Sbjct: 85 KPMPFPK-PMPKSK 97
Score = 32.7 bits (71), Expect = 1.0
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 393 YPRPAPFAIPNFPVPYVMPNYARAPGIMPNFMPFRLPFPMAYSRPRLCMPPQGF 446
+P+P F P P+P MP P MP P P PM + +P P F
Sbjct: 195 FPKPMLFPKP-MPIPKPMPFPKPMPKPMPKHKPKPFPKPMLFPKPMPIPKPMPF 247
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 35.5 bits (78), Expect = 0.14
Identities = 34/111 (30%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 360 HYYVNQPTRSLRPYVAPIFPLPMNFVPNIPLGMYPRPAP-FAIPNFPVPYVMPNYARAPG 418
H+ P PY + P P F P P G +P P P F P P++ P G
Sbjct: 273 HHPYGPPHPMHHPYA--MMPPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMG 330
Query: 419 IMPNFMPFRLPFPMAYSRPRLCMPPQGFWPVNFHNPPAPYFPVNRAKDTNG 469
FMP P PM + PP F+P PP P+F + T+G
Sbjct: 331 PPRGFMP--PPHPMMFRGGP--YPP--FFP-----PPPPHFMRPSSPPTDG 370
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 35.5 bits (78), Expect = 0.14
Identities = 34/111 (30%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 360 HYYVNQPTRSLRPYVAPIFPLPMNFVPNIPLGMYPRPAP-FAIPNFPVPYVMPNYARAPG 418
H+ P PY + P P F P P G +P P P F P P++ P G
Sbjct: 273 HHPYGPPHPMHHPYA--MMPPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMG 330
Query: 419 IMPNFMPFRLPFPMAYSRPRLCMPPQGFWPVNFHNPPAPYFPVNRAKDTNG 469
FMP P PM + PP F+P PP P+F + T+G
Sbjct: 331 PPRGFMP--PPHPMMFRGGP--YPP--FFP-----PPPPHFMRPSSPPTDG 370
>U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical
protein F35A5.5 protein.
Length = 125
Score = 34.3 bits (75), Expect = 0.33
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 386 PNIPLGMYPRPAPFAIPNFPVPYVMPNYARAPGIMPNFMPFRLPFPMAYSRPRLCMP 442
P IP+ P PAP +P PVP +P P MP MP +P P+ + CMP
Sbjct: 3 PPIPI---PIPAPVPVPA-PVPQPVPVPMPMPMPMPMPMPVPVPVPVQSNCCSCCMP 55
>AF067209-1|AAC16982.2| 553|Caenorhabditis elegans Warthog
(hedgehog-like family)protein 9 protein.
Length = 553
Score = 33.1 bits (72), Expect = 0.76
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 363 VNQPTRSLRPYV-APIFPLPMNFVPNIPLGMYPRPA---PFAIPNFPVPYVMPNYARAPG 418
V QPT P+V AP+ P P +P L +P P PF +P P +P + G
Sbjct: 344 VTQPTPPPNPFVFAPLPPFPQFGLPQPNLFQFPAPPAPPPFGVPQAPQLAPLPQHQHQFG 403
Query: 419 IMPNFMPFRLPFPMAY 434
F P P P +
Sbjct: 404 F---FQPPPQPQPQIF 416
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 32.7 bits (71), Expect = 1.0
Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 366 PTRSLRPYVAPIFPLPMNFVPNIPLGMYPRPAP----FAIPNFPVP-YVMPNYARAPGIM 420
P + RP AP P+ P P YP PAP P++P P Y P+Y
Sbjct: 328 PPATTRP--APASQPPVR-EPETPDSGYPSPAPQEPAHPSPSYPSPSYPSPSYPSPSYPS 384
Query: 421 PNFMPFRLPFPMAYSRPRLCMPPQGFWPVNFHNPPAP 457
P++ P AYS P P Q P ++ P+P
Sbjct: 385 PSYPSPSYPAEPAYSVPPPAKPEQ---PSGGYDAPSP 418
>U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical
protein C16B8.3 protein.
Length = 164
Score = 32.7 bits (71), Expect = 1.0
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 371 RPYVAPIFPLPMNFVPNIPLGMYPRPAPFAIPNFPVPY 408
+PY P P P G YP P P P +P PY
Sbjct: 127 QPYQIGTGATPAGMYPPPPTGQYPPPPPGQYPGYPRPY 164
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 32.7 bits (71), Expect = 1.0
Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 381 PMNFVPNIPLGMYPRPAPFAIPNFPVPYVMPNYARAPGIMPNFMPFRLPFPMAYSRPRLC 440
PM P P Y P P A P P+PY+ A P P + P+ P C
Sbjct: 75 PMPVAPPAPAPAY-NPYPCATPPCPLPYIPEPVAPVPAPAPVYEPYACAAPP-------C 126
Query: 441 MPPQGFW-PVNFHNPPAP 457
PP + P PP P
Sbjct: 127 PPPTPVYEPYACAAPPCP 144
>Z82088-2|CAB05001.1| 705|Caenorhabditis elegans Hypothetical
protein ZK256.1b protein.
Length = 705
Score = 32.3 bits (70), Expect = 1.3
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 206 RVELLKTVTSLGGFGDVDTDKTHGEIVVRPFDVGLVITRMAYNTIVVKEKAVCRFCDLEF 265
+++++K + +LG + D + + ++ D+G+ + T V KE A CD +F
Sbjct: 610 KLKIVKALQALGEVVAMTGDGVNDAVALKKADIGVAMG--VCGTDVCKEAADMILCDDDF 667
Query: 266 DGKDAMGHVNEAAEHNATLTVNFFLGEYRNN 296
A +A HN T V F L N+
Sbjct: 668 STMTAAIEEGKAIYHNITNFVRFQLSTKLNS 698
>Z81490-4|CAB04016.1| 705|Caenorhabditis elegans Hypothetical
protein ZK256.1b protein.
Length = 705
Score = 32.3 bits (70), Expect = 1.3
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 206 RVELLKTVTSLGGFGDVDTDKTHGEIVVRPFDVGLVITRMAYNTIVVKEKAVCRFCDLEF 265
+++++K + +LG + D + + ++ D+G+ + T V KE A CD +F
Sbjct: 610 KLKIVKALQALGEVVAMTGDGVNDAVALKKADIGVAMG--VCGTDVCKEAADMILCDDDF 667
Query: 266 DGKDAMGHVNEAAEHNATLTVNFFLGEYRNN 296
A +A HN T V F L N+
Sbjct: 668 STMTAAIEEGKAIYHNITNFVRFQLSTKLNS 698
>Z70205-9|CAA94122.2| 887|Caenorhabditis elegans Hypothetical
protein E02H4.3a protein.
Length = 887
Score = 31.9 bits (69), Expect = 1.8
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 396 PAPFAIPNFPVPYVMPNYARAPGIMPNFMPFRLPFPMAYS 435
P P + PVP + P+ P P P +LP P A S
Sbjct: 83 PTPKTVTPMPVPQIPPHQKMTPNPTPTQNPVQLPLPHAVS 122
>Z68003-5|CAA91979.2| 887|Caenorhabditis elegans Hypothetical
protein E02H4.3a protein.
Length = 887
Score = 31.9 bits (69), Expect = 1.8
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 396 PAPFAIPNFPVPYVMPNYARAPGIMPNFMPFRLPFPMAYS 435
P P + PVP + P+ P P P +LP P A S
Sbjct: 83 PTPKTVTPMPVPQIPPHQKMTPNPTPTQNPVQLPLPHAVS 122
>U41033-6|AAA82378.1| 859|Caenorhabditis elegans Hypothetical
protein K09E3.7 protein.
Length = 859
Score = 31.9 bits (69), Expect = 1.8
Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Query: 321 DHVESLSHMLLLTKSMEKCNPGISNCFRRPQNM-NHVNFSHYYVNQPTRSLRPYVAPIFP 379
DH + L +S+ G+ C RR N+ N V S + VN T +P + P +
Sbjct: 482 DHQREIPASTLKRRSVSDRMNGLP-CKRR--NLPNSVPMSSH-VNGSTMEAKPLLFPGWN 537
Query: 380 LPMNFVPNIPLGMYPRPAPFAIPNFPVPYVMPNYARAPGIMPNFMP 425
L P+ P P P IP P ++P P I P
Sbjct: 538 LHPAMAPSFPTQSTPSTIPSFIPTIPSTTLVPRIMSFPNIHGTISP 583
>U29097-5|AAA68413.1| 222|Caenorhabditis elegans Hypothetical
protein F18C5.5 protein.
Length = 222
Score = 31.9 bits (69), Expect = 1.8
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 375 APIFPLPMNFVPNIPLGMYPRPAPFAIPNFPVPYVMPN-YARAPGIMPNFMPFRLPFPMA 433
AP PLPM +P +P + P P IP PVP + P + P+ P P P
Sbjct: 78 APAKPLPMT-LPLLPPLL---PLPQFIP-VPVPVLSAEGLPTLPTLAPHTFPTFTPIPGM 132
Query: 434 YSRPRLCMPP 443
+ P L MPP
Sbjct: 133 PTMPALTMPP 142
>U21310-2|AAA62521.1| 322|Caenorhabditis elegans T box family
protein 11 protein.
Length = 322
Score = 31.9 bits (69), Expect = 1.8
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 13/81 (16%)
Query: 365 QPTRSLRPYVAPIFPLPMNFVPNIPLGMYPRPAPFAIPNFPVPYVMPNYARAPGIMPNFM 424
QP+ S P P+FP F P++ + M PF +P F P P+ I P
Sbjct: 244 QPSTSQSPPAPPVFP----FNPDLQMQMLQ---PFMLPQFGFPCGFPS------INPFMN 290
Query: 425 PFRLPFPMAYSRPRLCMPPQG 445
PF PF + P + +G
Sbjct: 291 PFLTPFTSMFPTPTVSPDGEG 311
>Z82088-3|CAF32230.1| 978|Caenorhabditis elegans Hypothetical
protein ZK256.1c protein.
Length = 978
Score = 31.5 bits (68), Expect = 2.3
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 206 RVELLKTVTSLGGFGDVDTDKTHGEIVVRPFDVGLVITRMAYNTIVVKEKAVCRFCDLEF 265
+++++K + +LG + D + + ++ D+G+ + T V KE A CD +F
Sbjct: 687 KLKIVKALQALGEVVAMTGDGVNDAVALKKADIGVAMG--VCGTDVCKEAADMILCDDDF 744
Query: 266 DGKDAMGHVNEAAEHNATLTVNFFL 290
A +A HN T V F L
Sbjct: 745 STMTAAIEEGKAIYHNITNFVRFQL 769
>Z82088-1|CAB05000.2| 901|Caenorhabditis elegans Hypothetical
protein ZK256.1a protein.
Length = 901
Score = 31.5 bits (68), Expect = 2.3
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 206 RVELLKTVTSLGGFGDVDTDKTHGEIVVRPFDVGLVITRMAYNTIVVKEKAVCRFCDLEF 265
+++++K + +LG + D + + ++ D+G+ + T V KE A CD +F
Sbjct: 610 KLKIVKALQALGEVVAMTGDGVNDAVALKKADIGVAMG--VCGTDVCKEAADMILCDDDF 667
Query: 266 DGKDAMGHVNEAAEHNATLTVNFFL 290
A +A HN T V F L
Sbjct: 668 STMTAAIEEGKAIYHNITNFVRFQL 692
>Z81490-5|CAF32231.1| 978|Caenorhabditis elegans Hypothetical
protein ZK256.1c protein.
Length = 978
Score = 31.5 bits (68), Expect = 2.3
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 206 RVELLKTVTSLGGFGDVDTDKTHGEIVVRPFDVGLVITRMAYNTIVVKEKAVCRFCDLEF 265
+++++K + +LG + D + + ++ D+G+ + T V KE A CD +F
Sbjct: 687 KLKIVKALQALGEVVAMTGDGVNDAVALKKADIGVAMG--VCGTDVCKEAADMILCDDDF 744
Query: 266 DGKDAMGHVNEAAEHNATLTVNFFL 290
A +A HN T V F L
Sbjct: 745 STMTAAIEEGKAIYHNITNFVRFQL 769
>Z81490-3|CAB04015.2| 901|Caenorhabditis elegans Hypothetical
protein ZK256.1a protein.
Length = 901
Score = 31.5 bits (68), Expect = 2.3
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 206 RVELLKTVTSLGGFGDVDTDKTHGEIVVRPFDVGLVITRMAYNTIVVKEKAVCRFCDLEF 265
+++++K + +LG + D + + ++ D+G+ + T V KE A CD +F
Sbjct: 610 KLKIVKALQALGEVVAMTGDGVNDAVALKKADIGVAMG--VCGTDVCKEAADMILCDDDF 667
Query: 266 DGKDAMGHVNEAAEHNATLTVNFFL 290
A +A HN T V F L
Sbjct: 668 STMTAAIEEGKAIYHNITNFVRFQL 692
>AJ303082-1|CAC19896.1| 901|Caenorhabditis elegans PMR1 protein
protein.
Length = 901
Score = 31.5 bits (68), Expect = 2.3
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 206 RVELLKTVTSLGGFGDVDTDKTHGEIVVRPFDVGLVITRMAYNTIVVKEKAVCRFCDLEF 265
+++++K + +LG + D + + ++ D+G+ + T V KE A CD +F
Sbjct: 610 KLKIVKALQALGEVVAMTGDGVNDAVALKKADIGVAMG--VCGTDVCKEAADMILCDDDF 667
Query: 266 DGKDAMGHVNEAAEHNATLTVNFFL 290
A +A HN T V F L
Sbjct: 668 STMTAAIEEGKAIYHNITNFVRFQL 692
>AJ303081-1|CAC19895.1| 901|Caenorhabditis elegans PMR1 protein
protein.
Length = 901
Score = 31.5 bits (68), Expect = 2.3
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 206 RVELLKTVTSLGGFGDVDTDKTHGEIVVRPFDVGLVITRMAYNTIVVKEKAVCRFCDLEF 265
+++++K + +LG + D + + ++ D+G+ + T V KE A CD +F
Sbjct: 610 KLKIVKALQALGEVVAMTGDGVNDAVALKKADIGVAMG--VCGTDVCKEAADMILCDDDF 667
Query: 266 DGKDAMGHVNEAAEHNATLTVNFFL 290
A +A HN T V F L
Sbjct: 668 STMTAAIEEGKAIYHNITNFVRFQL 692
>U29377-4|AAA68712.1| 412|Caenorhabditis elegans Hypothetical
protein K05F1.3 protein.
Length = 412
Score = 31.1 bits (67), Expect = 3.1
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 60 WNTLAVVGRQLSCAVCDQLCEANAFSEHISSEHHVRNMEKFEPLEEFGPTITRKIRQRYH 119
WN +AV RQ+S + D E + + S + V N KF+ EF I ++Q +
Sbjct: 11 WNRIAVQSRQMSFELSDTQKEIQSHAIKFSKDVLVPNAAKFDKSGEFPWEI---VKQAHS 67
Query: 120 CGICNVFL 127
G N +
Sbjct: 68 LGFMNTII 75
>Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical
protein Y69H2.10b protein.
Length = 975
Score = 30.7 bits (66), Expect = 4.1
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 14/101 (13%)
Query: 372 PYVAPI-FPLPMNFVPNIPLGMYPRPAPFAI---PNFPVPYVMP-NYARAP-GIMPNFMP 425
P +AP+ LP NF+ N L P AP + NF +P + P N + G MP F P
Sbjct: 114 PTMAPLNLSLP-NFM-NFTLPTMPTFAPLVLGDLSNFTLPTLAPFNLSHLGLGTMPTFAP 171
Query: 426 FRLPFPMAYSRPRLCMPPQG------FWPVNFHNPPAPYFP 460
L FP + L + G F P+N P P P
Sbjct: 172 LNLSFPGLPTMAPLNLSHLGLGTMPTFAPLNLSLPELPSLP 212
>Z98877-15|CAB63407.3| 572|Caenorhabditis elegans Hypothetical
protein Y69H2.10a protein.
Length = 572
Score = 30.7 bits (66), Expect = 4.1
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 14/101 (13%)
Query: 372 PYVAPI-FPLPMNFVPNIPLGMYPRPAPFAI---PNFPVPYVMP-NYARAP-GIMPNFMP 425
P +AP+ LP NF+ N L P AP + NF +P + P N + G MP F P
Sbjct: 114 PTMAPLNLSLP-NFM-NFTLPTMPTFAPLVLGDLSNFTLPTLAPFNLSHLGLGTMPTFAP 171
Query: 426 FRLPFPMAYSRPRLCMPPQG------FWPVNFHNPPAPYFP 460
L FP + L + G F P+N P P P
Sbjct: 172 LNLSFPGLPTMAPLNLSHLGLGTMPTFAPLNLSLPELPSLP 212
>AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical
protein Y119D3B.12a protein.
Length = 339
Score = 30.7 bits (66), Expect = 4.1
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 76 DQLCEANAFSEHISSEHHVRNMEKFEPLEEFGPTITRKIRQRYHCGICNVFLLDGDENQ- 134
D+ +A E ++ E EK E +T RQ C IC F+L D Q
Sbjct: 164 DRADKAKVEVEELTQEAEKLKSEK-ERAINMEENVTAGNRQMQVCQICGCFMLQNDAPQR 222
Query: 135 ---HFRTESHIAYQTKSN 149
H + HIAYQ S+
Sbjct: 223 VDDHLTGKLHIAYQQISD 240
>Z46934-6|CAA87045.3| 371|Caenorhabditis elegans Hypothetical
protein ZK1320.7 protein.
Length = 371
Score = 30.3 bits (65), Expect = 5.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 307 CAICNVFMKSNDLSDHVESLSHML 330
C +C+VF+ N S H+ S++H L
Sbjct: 222 CELCDVFIPKNASSTHISSITHQL 245
>U41534-6|AAB47598.1| 375|Caenorhabditis elegans Hypothetical
protein C16A3.4 protein.
Length = 375
Score = 30.3 bits (65), Expect = 5.4
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 70 LSCAVCDQLCEA-NAFSEHISSEHHVRNMEKFEPLEEFGPTITRK 113
L C C + ++ NA ++H++S+ H N +K E + GP RK
Sbjct: 71 LYCKACRKSIKSENAMTDHVASKKHKENEKKIEDDVKKGPKQPRK 115
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 30.3 bits (65), Expect = 5.4
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 372 PYVAPIFPLPMNFVPNIPLGMYPRPAPFAIPNFPVPYVMPN---YARAPGIMPNFMP 425
P P P P F P P+ P P P P P P P+ + P P+++P
Sbjct: 52 PVCPPPPPCPAQFCPPPPICPPPPPPPMPCPPPPPPMPRPSCPCMMQRPSFYPSYVP 108
>U28409-4|AAC46590.2| 394|Caenorhabditis elegans Saposin-like
protein family protein11 protein.
Length = 394
Score = 30.3 bits (65), Expect = 5.4
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 372 PYVAPIFPLPMNFVPNIPLGMYPRPAPFAIPNFPVPYVMP-NY--ARAPGIMPNFMP-FR 427
P P +P N+P P P +P +P ++P N+ P I+P +P +
Sbjct: 131 PITLPTIKIPEVVPTNLPTVEIPHFIPKTLPTVKIPNIIPTNFPTIETPDIIPKILPTIK 190
Query: 428 LPFPMAYSRPRLCMP 442
+P + + P + +P
Sbjct: 191 IPEIIPLTLPTVKIP 205
>AL132898-10|CAC14415.1| 390|Caenorhabditis elegans Hypothetical
protein Y59A8B.19 protein.
Length = 390
Score = 30.3 bits (65), Expect = 5.4
Identities = 38/102 (37%), Positives = 44/102 (43%), Gaps = 11/102 (10%)
Query: 363 VNQPTRSLRPYVAPIFPLPMNFVPNIPLGMYPRP--APF-AIPNFP-VPYVMPNYARAPG 418
V PT + P AP+ P P+ P +P PRP AP A+ P VP P AP
Sbjct: 231 VRPPTVPVNPPRAPVAP-PVA-PPRMP-DRPPRPPVAPSRALVRPPTVPVNPPRAPVAPP 287
Query: 419 IMPNFMPFRLPFPMAYSRPRLCMPPQGFWPVNFHNPPAPYFP 460
+ P MP R P P L PP PVN P AP P
Sbjct: 288 VAPPRMPDRPPRPPVAPPRALVRPPT--VPVN--PPRAPVAP 325
>Z81043-7|CAB02804.2| 550|Caenorhabditis elegans Hypothetical
protein C29F3.2 protein.
Length = 550
Score = 29.9 bits (64), Expect = 7.1
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 425 PFRLPFPMAYSRPRLCMPPQGFWPVNFHNPPAPYFPVN 462
PF PF +PR P QGF P PP +FP N
Sbjct: 275 PFAGPFQAQGFQPRFGAP-QGFQPAFQQPPPQQFFPQN 311
>U61237-1|AAB17542.1| 550|Caenorhabditis elegans M89 protein.
Length = 550
Score = 29.9 bits (64), Expect = 7.1
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 425 PFRLPFPMAYSRPRLCMPPQGFWPVNFHNPPAPYFPVN 462
PF PF +PR P QGF P PP +FP N
Sbjct: 275 PFAGPFQAQGFQPRFGAP-QGFQPAFQQPPPQQFFPQN 311
>AL023813-2|CAA19424.2| 550|Caenorhabditis elegans Hypothetical
protein C29F3.2 protein.
Length = 550
Score = 29.9 bits (64), Expect = 7.1
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 425 PFRLPFPMAYSRPRLCMPPQGFWPVNFHNPPAPYFPVN 462
PF PF +PR P QGF P PP +FP N
Sbjct: 275 PFAGPFQAQGFQPRFGAP-QGFQPAFQQPPPQQFFPQN 311
>AF101315-5|AAM34816.1| 457|Caenorhabditis elegans Hypothetical
protein T22H9.1 protein.
Length = 457
Score = 29.9 bits (64), Expect = 7.1
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 454 PPAPYFPVNRAKDTNGHARSKEGEADTGDSHSEDEDDCYDKDQRIWYQD 502
PPAP P N+ + G E E G SE+E+D D+D+R+ +++
Sbjct: 183 PPAPKKPKNQNVEEEG--SEDELERSEGSEGSEEEED--DEDERLKFRE 227
>Z81077-15|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
protein F36A2.13 protein.
Length = 2944
Score = 29.5 bits (63), Expect = 9.4
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 465 KDTNGHARSKEGEADTGDSHSEDEDDCYDKDQ 496
++ NG R +GE+ + D ++D+DD D+++
Sbjct: 1678 EERNGQPREFDGESSSSDDDNDDDDDDDDEEE 1709
>Z75952-6|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
F36A2.13 protein.
Length = 2944
Score = 29.5 bits (63), Expect = 9.4
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 465 KDTNGHARSKEGEADTGDSHSEDEDDCYDKDQ 496
++ NG R +GE+ + D ++D+DD D+++
Sbjct: 1678 EERNGQPREFDGESSSSDDDNDDDDDDDDEEE 1709
>AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical
protein Y67H2A.10 protein.
Length = 608
Score = 29.5 bits (63), Expect = 9.4
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 305 FHCAI--CNVFMKSN-DLSDHVESLSHMLLL--TKSM-----EKCNPGISNCFRRPQNMN 354
F CAI CN KS L H++ + ++++ KS+ E P IS + Q+
Sbjct: 153 FRCAIVDCNKRYKSMFALRVHMKIVHNVVVSEDAKSLTNYPSEDVKPNISALQQAMQHQQ 212
Query: 355 HVNFSHYYVNQPTRSLRPYVAPIFPLPMNFVPNIPLGMYPRPAPFAIPNFPVP 407
H++ PT + P V+ P PN PL P P A P F P
Sbjct: 213 IQQQHHHHQQIPTSAPEPSVSSGTPTTGTPAPNTPLAQ-GSPLPGAAPTFGNP 264
>AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical
protein C02B10.5 protein.
Length = 698
Score = 29.5 bits (63), Expect = 9.4
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 369 SLRPYVAPIFPLPMNFVPNIPLGMYPRPAPFAIPNFPVPYVMPNYARAPGIMPNFMPFRL 428
S P P P P P + G YP AP +P F P P A +P M R+
Sbjct: 426 SYPPMGGPFPPNPYGMHPGMTPGGYPMSAPGKMP-FGSP-SFPQSAPSPAAMAAMQQGRM 483
Query: 429 PFP 431
P P
Sbjct: 484 PGP 486
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.322 0.137 0.434
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,117,128
Number of Sequences: 27539
Number of extensions: 864143
Number of successful extensions: 2236
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 2165
Number of HSP's gapped (non-prelim): 76
length of query: 771
length of database: 12,573,161
effective HSP length: 87
effective length of query: 684
effective length of database: 10,177,268
effective search space: 6961251312
effective search space used: 6961251312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)
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