GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001651-TA|BGIBMGA001651-PA|IPR001484|Pyrokinin,
IPR000437|Prokaryotic membrane lipoprotein lipid attachment site,
IPR008730|Pheromone biosynthesis activating neuropeptide
         (187 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    26   3.0  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    26   4.0  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   5.2  
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    25   5.2  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    25   9.1  
SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharo...    25   9.1  

>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 131 PATPADQEMYQPDPEEMESRT 151
           P T + QE+ QP P+E +S+T
Sbjct: 3   PQTNSHQEVQQPSPKETDSQT 23


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 59  NRQTFLRLLEAADALK-FYYDQLP-YERQADEPETKVTKKIIFTPKLGRSVAKPQTHES 115
           +R+TF         LK  +Y QL   ++Q  + + K T +   TP++  + ++P TH++
Sbjct: 242 SRETFPPTAAQLQQLKQLHYRQLQSVQQQQKQHQQKKTPQSGSTPQMQNTTSQPTTHDT 300


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 120 PRLGRRLSEDMPATPADQEMYQPDPEEM--ESRTRYFSPRLGRTMSFSP 166
           P+L   +   M  +PA+Q+   P P+ +   S + Y +  LG +  F P
Sbjct: 217 PQLAPSIPSPMKLSPANQQAMPPYPQMLGPGSISSYTNSNLGPSAGFRP 265


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 124 RRLSEDMPATPADQEMYQPDPEEMESRTR 152
           RR  ED+P+    +E +  + EE+E+ T+
Sbjct: 272 RRFIEDLPSRTISREGFYSEEEEIENSTQ 300


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 112 THESLEFIPRLGRRLSEDMPAT-PADQEMYQPDPEEMESRTRYFSPRLGRTMSFSPRLGR 170
           T  SLEF+ +      +  P +  A  E Y  DP+  E+R +Y   + G  +  +  L R
Sbjct: 238 TARSLEFVTKFPVPNIKHAPISLTASLEEYLNDPDFEENRKQYLQNKSGSPVEETAILNR 297

Query: 171 E 171
           +
Sbjct: 298 K 298


>SPAC9E9.14 |vps24||vacuolar sorting protein
           Vps24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query: 30  SDRGAHSERGALWFGPRLGKRSMKPSTEDNRQTFLRLLEAADALK 74
           +D   H E+      P L     K STE + +  L + +  DALK
Sbjct: 186 ADAATHREQSLKQALPSLSNGIAKDSTEIDEEQLLDIRDKLDALK 230


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 861,628
Number of Sequences: 5004
Number of extensions: 34939
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 6
length of query: 187
length of database: 2,362,478
effective HSP length: 69
effective length of query: 118
effective length of database: 2,017,202
effective search space: 238029836
effective search space used: 238029836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)