Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001651-TA|BGIBMGA001651-PA|IPR001484|Pyrokinin,
IPR000437|Prokaryotic membrane lipoprotein lipid attachment site,
IPR008730|Pheromone biosynthesis activating neuropeptide
(187 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0873 + 32617428-32617532,32618166-32618234,32619195-326193... 29 1.7
02_02_0714 - 13222425-13223605,13224422-13224548,13225417-132254... 29 3.0
08_01_0006 + 52469-52719,52805-52904,53285-53350,53688-53747,540... 28 4.0
06_03_0726 + 23904350-23904964,23905986-23906021,23906158-239062... 28 4.0
09_04_0591 + 18813557-18813663,18814332-18814392,18814526-188146... 28 5.3
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 27 7.0
02_04_0577 - 24011542-24011906,24012285-24012385,24013029-240132... 27 7.0
12_01_0523 + 4162673-4164427 27 9.3
03_05_1154 + 30803983-30806047,30806152-30806968,30807362-308076... 27 9.3
>01_06_0873 +
32617428-32617532,32618166-32618234,32619195-32619380,
32619687-32619776,32620389-32620462,32621149-32621260,
32621413-32621468,32621826-32621880,32621965-32622021,
32622696-32622797,32623467-32623547,32623756-32623808,
32625245-32625314,32626540-32626603,32627339-32627487,
32627564-32627719,32628011-32628108,32628763-32628847,
32628932-32628997,32629066-32629125,32629408-32629494,
32630307-32630360,32630538-32630576,32630651-32630779,
32630859-32630911,32630984-32631032,32632240-32632298,
32633111-32633259,32633338-32633492,32633719-32633847,
32633932-32634017,32634220-32634335,32634429-32634541,
32635335-32635458,32635540-32635658,32636289-32636490,
32636586-32636757,32637852-32638176,32638442-32638529,
32638970-32639059,32639169-32639370,32639681-32639705
Length = 1450
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 103 LGRSVAKPQTHESLEFIPRLGRRLSEDMPATPA 135
LGR+ +P E L + +LG RL ED+ A A
Sbjct: 177 LGRNSVEPTVREKLSNVGKLGLRLLEDLTALAA 209
>02_02_0714 -
13222425-13223605,13224422-13224548,13225417-13225461,
13225776-13225840,13226138-13226264
Length = 514
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 34 AHSERGALWFGPRLGKRSMKPSTEDNRQTFLRLLEAADAL 73
AH +G WFG + K P + N F+RL+++ DA+
Sbjct: 364 AHVVQGLDWFGFEVVKAD--PKIDSNLDEFVRLVDSCDAI 401
>08_01_0006 +
52469-52719,52805-52904,53285-53350,53688-53747,
54029-54202,54932-54993,55934-56030,56487-56510
Length = 277
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 41 LW-FGPRLGKRSMKPSTEDNRQTFLR 65
LW GPR+G R +K T +N FLR
Sbjct: 202 LWRVGPRVGGRCLKAQTVENMDLFLR 227
>06_03_0726 +
23904350-23904964,23905986-23906021,23906158-23906256,
23906445-23906627,23907016-23907105,23907187-23907285,
23907584-23907688,23907786-23907926,23908009-23908296,
23908536-23908826
Length = 648
Score = 28.3 bits (60), Expect = 4.0
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 60 RQTFLRLLEAADALKF-YYDQLPYERQADEPETKVTKKIIFTPKLG-RSVAKPQTHESLE 117
R+++ LE ++ K QL E Q TK+ K+++ TPK S +P+
Sbjct: 400 RRSYTSKLEESEMRKQELLAQLAAEEQRGHELTKIVKELLPTPKKNMNSERQPRYRRRSN 459
Query: 118 FIPRLGRRLSED 129
R+ RRL+E+
Sbjct: 460 DRARVSRRLTEE 471
>09_04_0591 +
18813557-18813663,18814332-18814392,18814526-18814639,
18814923-18815054,18815380-18815774,18815896-18815995,
18816099-18816158,18816240-18816326,18816511-18816639,
18816888-18817187
Length = 494
Score = 27.9 bits (59), Expect = 5.3
Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 12/103 (11%)
Query: 82 YERQADEPETKVTKKIIFTPKLGRSVAKPQTHESLEFIPRLGRRLSED-----------M 130
+++ E + ++++ +P S+ + E++P++ +LSED +
Sbjct: 125 FDQYLSESGSVTSEEVSRSPSRHSSLVNFLSASISEYVPKISCKLSEDILSCIAAVYCKL 184
Query: 131 PATPADQEMYQPDPEEMESRTRYFSPRLGRTMSFSPRLGRELS 173
+ P Y P S + FSPR R S+SPR +++
Sbjct: 185 GSVPLQDSEYITSPSPSVSSSSTFSPR-NRNDSWSPRYNFDIT 226
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 142 PDPEEMESRTRY---FSPRLGRTMSFSPRLGRELSYGMFNVLGTFAV 185
P P ME R + +GRT S S LGR +G+ N L ++ +
Sbjct: 556 PSPGTMEQANRLAEDWKEMIGRTESCSMNLGRLAVWGLLNFLVSYNI 602
>02_04_0577 -
24011542-24011906,24012285-24012385,24013029-24013287,
24014176-24014264,24015331-24015419
Length = 300
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 149 SRTRYFSPRL-GRTMSFSPRLGRELSYG 175
SR+R SPR GR+ S SPR R SYG
Sbjct: 117 SRSRSRSPRYRGRSRSRSPRYRRSPSYG 144
>12_01_0523 + 4162673-4164427
Length = 584
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 111 QTHESLEFIPRLGRRLSEDMPATPADQEMYQPDPEEMESRTRYFSPRL 158
QT E ++ L R+S+ D +++ + EE E RY S +L
Sbjct: 472 QTREIYRYLEELIHRISDAGYVPETDSVLHELEEEEREVALRYHSEKL 519
>03_05_1154 + 30803983-30806047,30806152-30806968,30807362-30807655,
30808214-30808451
Length = 1137
Score = 27.1 bits (57), Expect = 9.3
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 119 IPRLGRRLSEDMPATPAD--QEMYQPDP-EEMESRTRYFSPRLGRTMSFSPRLGRELSYG 175
I L RL P P QEM++ P E Y S +L +TMS + + RE
Sbjct: 1053 IAHLEFRLVHPAPGVPEALIQEMFRHSPGASREGLGLYISQKLVKTMSGTVQYLRESESS 1112
Query: 176 MFNVLGTFAV 185
F VL F V
Sbjct: 1113 SFIVLVEFPV 1122
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,393,376
Number of Sequences: 37544
Number of extensions: 224643
Number of successful extensions: 451
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 448
Number of HSP's gapped (non-prelim): 9
length of query: 187
length of database: 14,793,348
effective HSP length: 78
effective length of query: 109
effective length of database: 11,864,916
effective search space: 1293275844
effective search space used: 1293275844
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
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