GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001651-TA|BGIBMGA001651-PA|IPR001484|Pyrokinin,
IPR000437|Prokaryotic membrane lipoprotein lipid attachment site,
IPR008730|Pheromone biosynthesis activating neuropeptide
         (187 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50029-8|CAA90342.2|  668|Caenorhabditis elegans Hypothetical pr...    30   0.89 
Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z83226-3|CAB05723.1|  211|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U53333-12|AAA96165.1|  387|Caenorhabditis elegans Nuclear hormon...    27   8.3  

>Z50029-8|CAA90342.2|  668|Caenorhabditis elegans Hypothetical
           protein ZC504.3 protein.
          Length = 668

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 2/97 (2%)

Query: 57  EDNRQTFLRLLEAADALKFYYDQLPYE-RQADEPETKVTKKIIFTPKLGRSVAKPQTHES 115
           ED   + + +L+  +   F +D      R ++EPE K  K          +   P T + 
Sbjct: 166 EDVEMSPVEMLDEEEVSTFTFDDACGPVRPSNEPEEKDYKSEGDPESRPATPKTPLTPDY 225

Query: 116 LE-FIPRLGRRLSEDMPATPADQEMYQPDPEEMESRT 151
           LE  I  L   LS+D    P D+    PD E+ ES T
Sbjct: 226 LENTIVSLNETLSDDEDKGPDDKYGKTPDKEQWESMT 262


>Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical
           protein F23H12.5 protein.
          Length = 802

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 7/120 (5%)

Query: 55  STEDNRQTFLRLLEAADALKF-YYDQLPYERQADEPETKVTKKIIFTPKLGRSVAKPQTH 113
           +++ N Q F +L+    A    Y+  +P   + DEP T    KI+      + + K + +
Sbjct: 432 TSQQNFQHFPKLMNEQRASPGPYFRTVPSPSEYDEPTTTKKPKIVTVEITNKPLKKKRRN 491

Query: 114 ESLEFIPRLGR-RLSEDMP---ATPADQEMY-QPDPEEME-SRTRYFSPRLGRTMSFSPR 167
             L+ + RLG+ R    +P     PA + M   P P + E     + +P+     +  P+
Sbjct: 492 RRLKKLNRLGKIRTMAVLPTEYTIPATKPMKPMPTPAKYEIQEENFIAPKATEPSASEPQ 551


>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 121 RLGRRLSEDMPATPADQEMYQPDPEEMESRTRYFSPRLGRTMSFSP 166
           RL R L+   PA PA      P P   +  +R+ SP + RT+  +P
Sbjct: 224 RLARPLAPP-PARPAAPPPPVPTPSIAQMSSRFQSPAISRTLDDAP 268


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 121 RLGRRLSEDMPATPADQEMYQPDPEEMESRTRYFSPRLGRTMSFSP 166
           RL R L+   PA PA      P P   +  +R+ SP + RT+  +P
Sbjct: 226 RLARPLAPP-PARPAAPPPPVPTPSIAQMSSRFQSPAISRTLDDAP 270


>Z83226-3|CAB05723.1|  211|Caenorhabditis elegans Hypothetical
           protein F43D2.3 protein.
          Length = 211

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 124 RRLSEDMPATPADQEMYQPDPEEMES-RTRYFSPRLGRTM 162
           R+L+ED+P TP D +    +     S R R    R G TM
Sbjct: 30  RKLTEDLPDTPDDNQTTSTNMSPRRSVRIRRMPVRYGSTM 69


>U53333-12|AAA96165.1|  387|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 78 protein.
          Length = 387

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 76  YYDQLPYERQADEPETKVTKKIIFTPKLGRSVAKPQTHESLEFIP 120
           Y   +P     DEP T++        +  R++ KP+ +  LEFIP
Sbjct: 246 YIQMMPLPLMGDEPGTELMFTRKEELEKYRNIIKPRVNSWLEFIP 290


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,660,614
Number of Sequences: 27539
Number of extensions: 195089
Number of successful extensions: 513
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 511
Number of HSP's gapped (non-prelim): 7
length of query: 187
length of database: 12,573,161
effective HSP length: 77
effective length of query: 110
effective length of database: 10,452,658
effective search space: 1149792380
effective search space used: 1149792380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)