GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001651-TA|BGIBMGA001651-PA|IPR001484|Pyrokinin,
IPR000437|Prokaryotic membrane lipoprotein lipid attachment site,
IPR008730|Pheromone biosynthesis activating neuropeptide
         (187 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   1.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   4.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.7  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)

Query: 44  GPRLGKRSMKPSTEDN 59
           GPR GKR  K ST +N
Sbjct: 210 GPRNGKRKRKSSTIEN 225


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 108 AKPQTHESLEFIPRLGRRLSEDMPATPA 135
           +KP   E+ +  P LGR    DM  T A
Sbjct: 407 SKPMCAEAFQEFPPLGRFAVRDMRQTVA 434


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 109 KPQTHESLEFIPRLGRRLSEDMPATPA 135
           KP   E+ +  P LGR    DM  T A
Sbjct: 408 KPMCVEAFQEFPPLGRFAVRDMRQTVA 434


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 128  EDMPATPADQEMYQPDPEEM 147
            ED+P +PAD ++    P+ +
Sbjct: 1211 EDVPGSPADIKVVVSSPQAL 1230


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 128  EDMPATPADQEMYQPDPEEM 147
            ED+P +PAD ++    P+ +
Sbjct: 1207 EDVPGSPADIKVVVSSPQAL 1226


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 6/17 (35%), Positives = 13/17 (76%)

Query: 137 QEMYQPDPEEMESRTRY 153
           Q +Y P+P+++E+  +Y
Sbjct: 648 QNIYIPEPQDIENIFKY 664


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,566
Number of Sequences: 429
Number of extensions: 2599
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 187
length of database: 140,377
effective HSP length: 54
effective length of query: 133
effective length of database: 117,211
effective search space: 15589063
effective search space used: 15589063
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)