GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001650-TA|BGIBMGA001650-PA|IPR001577|Peptidase M8,
leishmanolysin
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.43 
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    29   1.7  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    28   4.0  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    28   4.0  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    27   7.0  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    27   7.0  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    27   9.3  
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce...    27   9.3  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 9/83 (10%)

Query: 304 GKGLGCKFAMSSCKQWMNLQRLRRRNPAPFCERIKGNPLRTECSPRRSAVVLCNLVR--- 360
           GKG GC F   S + W+       R   P  ER  GN L  +   R S  V   + +   
Sbjct: 645 GKGPGCGFWAPSWRVWL----FFLRGIVPLLERWLGNLLARQFEGRHSTGVAKQITKQRV 700

Query: 361 --HDNLLPRAYQHFDILPNVPPG 381
             H +L  RA    DIL  +P G
Sbjct: 701 DSHQDLELRAAVMNDILDMIPEG 723


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 388 GSVSLADYCPYLQEFTWRHKSVLIRGSRCSYEENTPKIDLNFALENYGQHSKCFEHSD 445
           G+  + D  P+L  F  RH+   +    C ++ ++ ++  N  L++Y  H   F + D
Sbjct: 914 GNPDVLDSSPHLLSFNKRHRLADVVADVCRFQSSSYEMQSNTDLQSYILHRCRFVNQD 971


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 522 FAARSEYCKPGEEPLPPNLYPNDF 545
           F A S +C PG + L  ++YP++F
Sbjct: 198 FVALSSFCPPGGKLLKVSIYPSEF 221


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 430 ALENYGQHSKCFEHSDKVWE 449
           AL+N+  H++CF  +  VWE
Sbjct: 64  ALKNFSYHARCFHATRAVWE 83


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 386 YGGSVSLADYCPYLQEFTWRH 406
           YGG  S    C Y   F WRH
Sbjct: 156 YGGMKSYRQMCRYFSGFFWRH 176


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 54  PDDEPATEVSENNLDERSDVIDEDSEPVGVK-DTDFMLY 91
           PDDE    + E+NL E   ++D +S    VK DT    Y
Sbjct: 114 PDDEEEFVMEEDNLGEAPLLVDSESYEASVKADTSRKAY 152


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 52  PPPDDEPATEVSENNLDERSDVIDEDSEPVG 82
           P P   PA   +E N+D +   +DE   PVG
Sbjct: 210 PIPSSPPAALETEENVDSQPMELDEPELPVG 240


>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 348 PRRSAVVLCNLVRHDNLLPRAYQHFDILPNVPPGQEAYYGGSVSLADYCPYL 399
           PR   + + NL   D+LL RA    DIL N   G E   G ++ +  +  +L
Sbjct: 154 PREPPMKVTNLESRDSLLTRARGFTDILFNEAIGFEGESGKTIVVVSHGIFL 205


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,710
Number of Sequences: 5004
Number of extensions: 128952
Number of successful extensions: 283
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 12
length of query: 568
length of database: 2,362,478
effective HSP length: 76
effective length of query: 492
effective length of database: 1,982,174
effective search space: 975229608
effective search space used: 975229608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)