GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001649-TA|BGIBMGA001649-PA|undefined
         (245 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.6  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   3.4  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    23   3.4  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   7.9  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    21   7.9  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   7.9  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/44 (20%), Positives = 23/44 (52%)

Query: 143 QMEFINRLKSEGNILRDSKTKENIETKNDFDQLIDDVEKKQNET 186
           +++ IN +  +  +L +        +K+D++ L+    + Q+ET
Sbjct: 221 RIDAINHMFEDARLLDEPSANRTDLSKDDYESLVHLYTRDQSET 264


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 142 RQMEFINRLKSEGNILRDSKTKENIETKNDFDQLIDDVEKKQ 183
           ++ E +   K    ++ DS  +   + K+D D L   VEK +
Sbjct: 156 QRQEVLQAFKQVQLLVSDSDVESYKQIKSDLDVLRQSVEKSE 197


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 142 RQMEFINRLKSEGNILRDSKTKENIETKNDFDQLIDDVEKKQ 183
           ++ E +   K    ++ DS  +   + K+D D L   VEK +
Sbjct: 124 QRQEVLQAFKQVQLLVSDSDVESYKQIKSDLDVLRQSVEKSE 165


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/29 (24%), Positives = 16/29 (55%)

Query: 164 ENIETKNDFDQLIDDVEKKQNETQIEMSK 192
           + +  K   ++++D+++KK    Q   SK
Sbjct: 115 QGMRGKKSLEEILDEIKKKTTRFQDSRSK 143


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/29 (24%), Positives = 16/29 (55%)

Query: 164 ENIETKNDFDQLIDDVEKKQNETQIEMSK 192
           + +  K   ++++D+++KK    Q   SK
Sbjct: 115 QGMRGKKSLEEILDEIKKKTTRFQDSRSK 143


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/29 (24%), Positives = 16/29 (55%)

Query: 164 ENIETKNDFDQLIDDVEKKQNETQIEMSK 192
           + +  K   ++++D+++KK    Q   SK
Sbjct: 115 QGMRGKKSLEEILDEIKKKTTRFQDSRSK 143


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.131    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,106
Number of Sequences: 429
Number of extensions: 2991
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 245
length of database: 140,377
effective HSP length: 56
effective length of query: 189
effective length of database: 116,353
effective search space: 21990717
effective search space used: 21990717
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)