Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001648-TA|BGIBMGA001648-PA|IPR001015|Ferrochelatase
         (329 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ...   299   5e-82
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    30   0.39 
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    26   6.4  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   6.4  

>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 384

 Score =  299 bits (733), Expect = 5e-82
 Identities = 145/321 (45%), Positives = 206/321 (64%), Gaps = 2/321 (0%)

Query: 2   ILPRLPPAFSTASGTAVKPKTAIVMLNMGGPETTDQVGDYLHRIMTDRDMIQLPV-QSKL 60
           ++   PP   T S +   P TA+VM+NMGGP   D+VG +L R+ TD D+I L   Q+ L
Sbjct: 14  VMDESPPNGVTKSVSGKGP-TAVVMMNMGGPSNLDEVGPFLERLFTDGDIIPLGYFQNSL 72

Query: 61  GPWIASRRTEEVKKKYSEIGGGSPILKWTNSQGSLLTQALDQMLPESAPHKHYVAFRYVP 120
           G +IA RRT +V+  YS+IGGGSPIL WT  QGS + + LD+  PESAPH  +VAFRY P
Sbjct: 73  GKFIAKRRTPKVQNHYSDIGGGSPILHWTRIQGSEMCKILDKKCPESAPHLPFVAFRYAP 132

Query: 121 PFTEDAFREVESDGADRVIIFSQYPQYSCATTGSSLNAIADFYRNRTTPANVKFSLIERW 180
           P TED   E++     R + FSQYPQ+SCAT+G+SLN +      +    + ++S+++RW
Sbjct: 133 PLTEDMLDELKKANVSRAVAFSQYPQWSCATSGASLNELRRKLIEKGMEKDFEWSIVDRW 192

Query: 181 ASHKLLAKVFSERIKEKLDKFDEKIRDDVLILFTAHSLPLKAVSRGDTYPHEVASTVSRT 240
              + L   F+E I+E L  + E +RDDV+I+F+AHSLP+  V++GD Y +E+A+T    
Sbjct: 193 PLQQGLINAFAENIEETLKTYPEDVRDDVVIVFSAHSLPMSQVAKGDPYVYEIAATSQAV 252

Query: 241 MEELGGRNPHRLVWQSKVGPLPWLQPYTDDAIKLYAKQGVKHLILVPVAFVNEHIETLHE 300
           M+ L  +N     WQSKVGPLPW+ P TD  I+    +G K++ILVP+AF ++HIETL E
Sbjct: 253 MKRLNYKNKFVNAWQSKVGPLPWMSPATDFVIEQLGNRGQKNMILVPIAFTSDHIETLKE 312

Query: 301 LDIEYCDEVAKELRTISELSA 321
           L+    D   K +  +  +S+
Sbjct: 313 LEDYIEDAKQKGITGVKRVSS 333


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 14  SGTAVKPKTAIVMLNMGGPETTDQVGDYLHRIMTDRDMIQLPVQSKLGPWIASRRTEEVK 73
           S + + PK  +  LN   P+  + +GD        + +I+   +   G W+A+ R EEV 
Sbjct: 233 SPSTIDPKGYLTSLNSMVPKNANDLGDIRKARKLLQSVIETNPKHASG-WVAAARLEEVA 291

Query: 74  KKYSE 78
            K S+
Sbjct: 292 NKLSQ 296


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 164 RNRTTPANVKFSLIERWASHKLLAKVFSERIKEKLDKFDEKI 205
           R+  +   ++ SL+  W    +LAK+ S   KE+L+ F E +
Sbjct: 458 RSYKSTMKIQKSLLVNWLLELMLAKLNSLDEKERLELFPENV 499


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 64   IASRRTEEVKKKYSEIGGGSPILKWT--NSQGSLLTQALD 101
            I  RR EE   K+S++G G  ++K T   SQ   L Q  D
Sbjct: 1422 IVDRRYEEWYGKFSDLGDGKVLVKLTGERSQDLKLIQVAD 1461


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,535,253
Number of Sequences: 5004
Number of extensions: 65987
Number of successful extensions: 193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 4
length of query: 329
length of database: 2,362,478
effective HSP length: 73
effective length of query: 256
effective length of database: 1,997,186
effective search space: 511279616
effective search space used: 511279616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)