Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001648-TA|BGIBMGA001648-PA|IPR001015|Ferrochelatase
         (329 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33863| Best HMM Match : No HMM Matches (HMM E-Value=.)             372   e-103
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)                   32   0.74 
SB_13395| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_56534| Best HMM Match : RVT_1 (HMM E-Value=5.5e-28)                 30   2.3  
SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30)                 30   2.3  
SB_50857| Best HMM Match : RVT_1 (HMM E-Value=9.8e-33)                 30   2.3  
SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         30   2.3  
SB_4361| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_35360| Best HMM Match : rve (HMM E-Value=0.014)                     30   2.3  
SB_31771| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_13114| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_6987| Best HMM Match : RVT_1 (HMM E-Value=2.2e-21)                  30   2.3  
SB_6213| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   3.0  
SB_59754| Best HMM Match : rve (HMM E-Value=8e-19)                     29   4.0  
SB_23935| Best HMM Match : bZIP_Maf (HMM E-Value=0.76)                 29   5.2  
SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8)                      29   5.2  
SB_21410| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.9  
SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.9  
SB_44102| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.9  

>SB_33863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 597

 Score =  372 bits (915), Expect = e-103
 Identities = 166/306 (54%), Positives = 224/306 (73%)

Query: 8   PAFSTASGTAVKPKTAIVMLNMGGPETTDQVGDYLHRIMTDRDMIQLPVQSKLGPWIASR 67
           P  +    +++ PKT I++LN+GGPE  + V  +L R+ +D+D+I LP Q +L  WIA R
Sbjct: 229 PKQAAVEESSLAPKTGILLLNLGGPEKQEDVHGFLLRLFSDKDLIPLPAQKQLAAWIAKR 288

Query: 68  RTEEVKKKYSEIGGGSPILKWTNSQGSLLTQALDQMLPESAPHKHYVAFRYVPPFTEDAF 127
           RT ++K++Y +IGGGSPI  WT  QG  + + LDQ+ PE+APHK YV FRY  P TEDA 
Sbjct: 289 RTPKIKEQYQKIGGGSPIKMWTEKQGQGMVELLDQLSPETAPHKFYVGFRYATPLTEDAI 348

Query: 128 REVESDGADRVIIFSQYPQYSCATTGSSLNAIADFYRNRTTPANVKFSLIERWASHKLLA 187
            ++E DG +R I F+QYPQYSC+TTGSS+NAI  +Y+ R   +++K+S I+RW +H  L 
Sbjct: 349 EQMERDGIERAIAFTQYPQYSCSTTGSSINAIYKYYKQRQGNSSLKWSAIDRWPTHPGLI 408

Query: 188 KVFSERIKEKLDKFDEKIRDDVLILFTAHSLPLKAVSRGDTYPHEVASTVSRTMEELGGR 247
           K F++ +K +L KF E+++ DV+ILF+AHSLP+K V RGD YP EVA+TV R ME L   
Sbjct: 409 KAFADNVKVELSKFPEEVQKDVVILFSAHSLPMKVVDRGDPYPQEVAATVQRVMEALDFS 468

Query: 248 NPHRLVWQSKVGPLPWLQPYTDDAIKLYAKQGVKHLILVPVAFVNEHIETLHELDIEYCD 307
           + +RLVWQSKVGPLPWL P T+DAIK  AK   K+L+LVP+AF ++HIETLHELDIEY  
Sbjct: 469 HSYRLVWQSKVGPLPWLGPQTEDAIKGLAKNNKKNLLLVPIAFTSDHIETLHELDIEYAQ 528

Query: 308 EVAKEL 313
           E+A E+
Sbjct: 529 ELAHEV 534


>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 1024

 Score = 31.9 bits (69), Expect = 0.74
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 192 ERIKEKLDKFDEKIRDDVLILFTAHSLPL-KAVSRGDTYPHEVASTVSRTME-ELGGRNP 249
           ER+K +L K   K R D  ++    +  + K ++    YPHEVA T  R  E E  GR  
Sbjct: 912 ERLKAELLKLHYKSRRDFHVVECMLAAGISKCIATSLCYPHEVARTRLRQQESEFLGRQK 971

Query: 250 HRLVWQS 256
           +R  +Q+
Sbjct: 972 YRSFFQT 978


>SB_13395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 254  WQSKVGPLPWLQPYTDDAIKLYAKQGV---KHLILVPVAFVNEHIETLHE 300
            W   +  LP L+PY +    L   +G+    H I++P +   E +ET+HE
Sbjct: 1053 WPPIMPSLPLLKPYWEKKQHLTVNRGILMYDHRIVIPSSMQLEMLETIHE 1102


>SB_56534| Best HMM Match : RVT_1 (HMM E-Value=5.5e-28)
          Length = 1052

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 254 WQSKVGPLPWLQPYTDDAIKLYAKQGV---KHLILVPVAFVNEHIETLHE 300
           W   +  LP L+PY +    L   +G+    H +++P +   E +ET+HE
Sbjct: 817 WPPIMPSLPLLKPYWEKKQHLTVNRGILMYDHRLVIPSSMQLEMLETIHE 866


>SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30)
          Length = 1246

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 254 WQSKVGPLPWLQPYTDDAIKLYAKQGV---KHLILVPVAFVNEHIETLHE 300
           W   +  LP L+PY +    L   +G+    H +++P +   E +ET+HE
Sbjct: 887 WPPIMPSLPLLKPYWEKKQHLTVNRGILMYDHRLVIPSSMQLEMLETIHE 936


>SB_50857| Best HMM Match : RVT_1 (HMM E-Value=9.8e-33)
          Length = 829

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 254 WQSKVGPLPWLQPYTDDAIKLYAKQGV---KHLILVPVAFVNEHIETLHE 300
           W   +  LP L+PY +    L   +G+    H +++P +   E +ET+HE
Sbjct: 595 WPPIMPSLPLLKPYWEKKQHLTVNRGILMYDHRLVIPSSMQLEMLETIHE 644


>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 254 WQSKVGPLPWLQPYTDDAIKLYAKQGV---KHLILVPVAFVNEHIETLHE 300
           W   +  LP L+PY +    L   +G+    H +++P +   E +ET+HE
Sbjct: 174 WPPIMPSLPLLKPYWEKKQHLTVNRGILMYDHRLVIPSSMQLEMLETIHE 223


>SB_4361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 254 WQSKVGPLPWLQPYTDDAIKLYAKQGV---KHLILVPVAFVNEHIETLHE 300
           W   +  LP L+PY +    L   +G+    H +++P +   E +ET+HE
Sbjct: 355 WPPIMPSLPLLKPYWEKKQHLTVNRGILMYDHRLVIPSSMQLEMLETIHE 404


>SB_35360| Best HMM Match : rve (HMM E-Value=0.014)
          Length = 247

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 254 WQSKVGPLPWLQPYTDDAIKLYAKQGV---KHLILVPVAFVNEHIETLHE 300
           W   +  LP L+PY +    L   +G+    H +++P +   E +ET+HE
Sbjct: 50  WPPIMPSLPLLKPYWEKKQHLTVNRGILMYDHRLVIPSSMQLEMLETIHE 99


>SB_31771| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1963

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 254  WQSKVGPLPWLQPYTDDAIKLYAKQGV---KHLILVPVAFVNEHIETLHE 300
            W   +  LP L+PY +    L   +G+    H +++P +   E +ET+HE
Sbjct: 1564 WPPIMPSLPLLKPYWEKKQHLTVNRGILMYDHRLVIPSSMQLEMLETIHE 1613


>SB_13114| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 254 WQSKVGPLPWLQPYTDDAIKLYAKQGV---KHLILVPVAFVNEHIETLHE 300
           W   +  LP L+PY +    L   +G+    H +++P +   E +ET+HE
Sbjct: 164 WPPIMPSLPLLKPYWEKKQHLTVNRGILMYDHRLVIPSSMQLEMLETIHE 213


>SB_6987| Best HMM Match : RVT_1 (HMM E-Value=2.2e-21)
          Length = 521

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 254 WQSKVGPLPWLQPYTDDAIKLYAKQGVK---HLILVPVAFVNEHIETLHE 300
           W   +  LP L+PY +    L   +G+    H +++P +   E +ET+HE
Sbjct: 399 WPPIMPSLPLLKPYWEKKQHLTVNRGIMMYDHRLVIPSSMQLEMLETIHE 448


>SB_6213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 36 DQVGDYLHRIMTDRDMI-QLPVQSKLGPWIASRRTEEVKK 74
          DQ    L R+ T ++ I  L V+  L PW+A+R  +E +K
Sbjct: 19 DQKRKILQRLKTQQNSITNLEVKPSLSPWLATRLEQEPRK 58


>SB_59754| Best HMM Match : rve (HMM E-Value=8e-19)
          Length = 1065

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 254 WQSKVGPLPWLQPYTDDAIKLYAKQGV---KHLILVPVAFVNEHIETLHE 300
           W   +  LP L+PY +    L   +G+    H +++P +   E +ET+HE
Sbjct: 563 WPPIMPCLPLLKPYWEKKQHLTVNRGILMYDHRLVIPSSMQLEMLETIHE 612


>SB_23935| Best HMM Match : bZIP_Maf (HMM E-Value=0.76)
          Length = 715

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 55  PVQSKLGPWIASRRTEEVKKKYSEIGGGSPILKWTNSQGSLLTQALDQMLPESAP-HKHY 113
           P Q    P+   ++ EE++K+  ++   +  L+ +  + + L +A + +L   AP  +H 
Sbjct: 178 PTQLTQVPFEFQKKLEELEKEVRDLQNRNRALEESYKKLTDLVEAQNHLLSSGAPLLQHI 237

Query: 114 VAFRYVPPFTEDAFREVESDGAD-RVIIFSQYPQYSCATT 152
            A   +    E+  R  E    D +VI  S  P Y  + T
Sbjct: 238 HAQSAIQSTREELVRTPEPQTTDHKVIATSSIPSYVTSAT 277


>SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8)
          Length = 210

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 89  TNSQGSLLTQALDQMLPESAPHKHYVAFRYVPPFTEDAFRE 129
           T S   L+    D+ML +    + Y  +RY+PP T++++ E
Sbjct: 33  TRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQNSYVE 73


>SB_21410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 16/59 (27%), Positives = 26/59 (44%)

Query: 214 TAHSLPLKAVSRGDTYPHEVASTVSRTMEELGGRNPHRLVWQSKVGPLPWLQPYTDDAI 272
           T  ++  + + +   +  EVA T    + EL G   H   W+ + G  P +Q   DD I
Sbjct: 152 TKRAVRAEVIGQLKNHVEEVAGTADEDVRELVGDLLHSKRWRGEFGAPPTVQHKYDDKI 210


>SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 15/69 (21%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 177 IERWASHKLLAKVFSERIKEKLDKFDEKIRDDVLILFTAHSLPLKAVSRGDTYPHE-VAS 235
           I R +  + + ++ +  ++  LDK +EK R+  + +  +  LP+ ++  G T+  E + +
Sbjct: 235 ILRDSDKEKVTRIITATLRNLLDKPEEKKRESAVSMIQSKLLPVLSILNGKTWADEDIKA 294

Query: 236 TVSRTMEEL 244
            +    E+L
Sbjct: 295 DIEYVYEKL 303


>SB_44102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 58  SKLGPWIASRRTEEVKKKYSEIGGGSPILKWTNSQ 92
           S L PWI   R  E+++   ++ GGS + +  NSQ
Sbjct: 277 SFLNPWIYGLRNSEIRRAMRKVFGGSAVCR-VNSQ 310


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,081,443
Number of Sequences: 59808
Number of extensions: 470742
Number of successful extensions: 1511
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1507
Number of HSP's gapped (non-prelim): 19
length of query: 329
length of database: 16,821,457
effective HSP length: 82
effective length of query: 247
effective length of database: 11,917,201
effective search space: 2943548647
effective search space used: 2943548647
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)