Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001648-TA|BGIBMGA001648-PA|IPR001015|Ferrochelatase
         (329 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30390.1 68415.m03698 ferrochelatase II identical to Swiss-Pr...   217   1e-56
At5g26030.1 68418.m03097 ferrochelatase I identical to Swiss-Pro...   213   1e-55
At3g01660.1 68416.m00097 expressed protein similar to putative p...    35   0.065
At5g48310.1 68418.m05968 expressed protein                             31   1.1  
At2g33150.1 68415.m04062 acetyl-CoA C-acyltransferase, putative ...    31   1.4  
At4g33810.1 68417.m04798 glycosyl hydrolase family 10 protein si...    29   3.3  
At1g59800.1 68414.m06733 cullin-related similar to cullin 3 [Hom...    29   3.3  
At5g50260.1 68418.m06224 cysteine proteinase, putative similar t...    29   5.7  
At1g72860.1 68414.m08427 disease resistance protein (TIR-NBS-LRR...    29   5.7  
At5g04020.1 68418.m00382 calmodulin-binding protein-related (PIC...    28   9.9  

>At2g30390.1 68415.m03698 ferrochelatase II identical to
           Swiss-Prot:O04921 ferrochelatase II, chloroplast
           precursor (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme
           synthetase) [Arabidopsis thaliana]
          Length = 512

 Score =  217 bits (529), Expect = 1e-56
 Identities = 116/306 (37%), Positives = 181/306 (59%), Gaps = 14/306 (4%)

Query: 9   AFSTASGTAVKPKTAIVMLNMGGPETTDQVGDYLHRIMTDRDMIQLP-----VQSKLGPW 63
           A S++S      K  +++LN+GGPET D V  +L  +  D D+I+LP     +Q  L  +
Sbjct: 88  AISSSSVITDDAKIGVLLLNLGGPETLDDVQPFLFNLFADPDIIRLPPVFQFLQKPLAQF 147

Query: 64  IASRRTEEVKKKYSEIGGGSPILKWTNSQGSLLTQALDQMLPESAPHKHYVAFRYVPPFT 123
           I+  R  + K+ Y+ IGGGSP+   T++Q   L + L +   ++ P K YV  RY  PFT
Sbjct: 148 ISVARAPKSKEGYASIGGGSPLRHITDAQAEELRKCLWE---KNVPAKVYVGMRYWHPFT 204

Query: 124 EDAFREVESDGADRVIIFSQYPQYSCATTGSSLNAIADFYRNRTTPANVKFSLIERWASH 183
           E+A  +++ DG  ++++   YPQ+S +T+GSSL  +   +R      N++ ++I  W   
Sbjct: 205 EEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLERIFREDEYLVNMQHTVIPSWYQR 264

Query: 184 KLLAKVFSERIKEKLDKFDEKIRDDVLILFTAHSLPLKAVSR-GDTYPHEVASTVSRTME 242
           +   K  +  I+ +L KF     + V+I F+AH +PL  V   GD Y  E+   V   ME
Sbjct: 265 EGYIKAMANLIQSELGKFGSP--NQVVIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIME 322

Query: 243 ELGGR---NPHRLVWQSKVGPLPWLQPYTDDAIKLYAKQGVKHLILVPVAFVNEHIETLH 299
           EL  R   N + L +QS+VGP+ WL+PYT++AI    K+GV++L+ VP++FV+EHIETL 
Sbjct: 323 ELDKRKITNAYTLAYQSRVGPVEWLKPYTEEAITELGKKGVENLLAVPISFVSEHIETLE 382

Query: 300 ELDIEY 305
           E+D+EY
Sbjct: 383 EIDVEY 388


>At5g26030.1 68418.m03097 ferrochelatase I identical to
           Swiss-Prot:P42043 ferrochelatase I,
           chloroplast/mitochondrial precursor (EC 4.99.1.1)
           (Protoheme ferro-lyase) (Heme synthetase) [Arabidopsis
           thaliana]
          Length = 466

 Score =  213 bits (521), Expect = 1e-55
 Identities = 110/301 (36%), Positives = 176/301 (58%), Gaps = 14/301 (4%)

Query: 14  SGTAVKPKTAIVMLNMGGPETTDQVGDYLHRIMTDRDMIQLP-----VQSKLGPWIASRR 68
           S    + K  +++LN+GGPET + V  +L+ +  D D+I+LP     +Q  +  +I+  R
Sbjct: 82  SHVVAEDKIGVLLLNLGGPETLNDVQPFLYNLFADPDIIRLPRPFQFLQGTIAKFISVVR 141

Query: 69  TEEVKKKYSEIGGGSPILKWTNSQGSLLTQALDQMLPESAPHKHYVAFRYVPPFTEDAFR 128
             + K+ Y+ IGGGSP+ K T+ Q   +  +L     ++     YV  RY  PFTE+A +
Sbjct: 142 APKSKEGYAAIGGGSPLRKITDEQADAIKMSLQA---KNIAANVYVGMRYWYPFTEEAVQ 198

Query: 129 EVESDGADRVIIFSQYPQYSCATTGSSLNAIADFYRNRTTPANVKFSLIERWASHKLLAK 188
           +++ D   R+++   YPQYS +TTGSS+  + D +R     A V  ++I+ W   +    
Sbjct: 199 QIKKDKITRLVVLPLYPQYSISTTGSSIRVLQDLFRKDPYLAGVPVAIIKSWYQRRGYVN 258

Query: 189 VFSERIKEKLDKFDEKIRDDVLILFTAHSLPLKAVSR-GDTYPHEVASTVSRTMEELGGR 247
             ++ I+++L  F +    +V+I F+AH +P+  V   GD Y  ++   +   MEEL  R
Sbjct: 259 SMADLIEKELQTFSDP--KEVMIFFSAHGVPVSYVENAGDPYQKQMEECIDLIMEELKAR 316

Query: 248 ---NPHRLVWQSKVGPLPWLQPYTDDAIKLYAKQGVKHLILVPVAFVNEHIETLHELDIE 304
              N H+L +QS+VGP+ WL+PYTD+ +    K GVK L+ VPV+FV+EHIETL E+D+E
Sbjct: 317 GVLNDHKLAYQSRVGPVQWLKPYTDEVLVDLGKSGVKSLLAVPVSFVSEHIETLEEIDME 376

Query: 305 Y 305
           Y
Sbjct: 377 Y 377


>At3g01660.1 68416.m00097 expressed protein similar to putative
           protein GB:CAB45319 [Arabidopsis thaliana]
          Length = 273

 Score = 35.1 bits (77), Expect = 0.065
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 141 FSQYPQYSCATTGSSLNAIADFYRNRTTPANVKFSLIERWASH 183
           F  YP++      S ++++ + YRNR  P +    L+  W SH
Sbjct: 66  FYSYPRFVNHVDDSFISSLTELYRNRLRPGSTVLDLMSSWVSH 108


>At5g48310.1 68418.m05968 expressed protein
          Length = 1156

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 100 LDQMLPESAPHKHYVAFRYVPPFTEDAFREVESDGADRVIIFSQYPQYS 148
           LD+   E  P    +      PF ED +  ++    +  ++ S++PQY+
Sbjct: 842 LDRCRAEKVPWSGVITNHSTSPFAEDIYERIKDSLIEYEVVISRWPQYT 890


>At2g33150.1 68415.m04062 acetyl-CoA C-acyltransferase, putative /
           3-ketoacyl-CoA thiolase, putative similar to
           3-ketoacyl-CoA thiolase (E.C. 2.3.1.16) from
           [Arabidopsis thaliana] GI:2981616, [Cucumis sativus]
           GI:393707, [Cucurbita cv. Kurokawa Amakuri] GI:1694621;
           contains InterPro accession IPR002155: Thiolase
          Length = 462

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 207 DDVLILFTAHSLPLKAVSRG---DTYPHEVASTVSRTMEELGGRNP 249
           DDV+I+  AH  PL    RG   DTYP ++ + V R + E    NP
Sbjct: 50  DDVVIV-AAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNP 94


>At4g33810.1 68417.m04798 glycosyl hydrolase family 10 protein
           similar to tapetum specific protein GI:3885492 from [Zea
           mays]
          Length = 536

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 122 FTEDAFREVESDGADRVIIFSQYPQYSCATTGSSLNAIADFYRNRTTPANVKFSLIERWA 181
           + E+  RE  S  A + II    P+ S    G     +AD Y N T   +V   L++ W 
Sbjct: 418 YIEEILREAYSHPAVKGIIIFAGPEVS----GFDKLTLADKYFNNTATGDVIDKLLKEWQ 473

Query: 182 SHKLLAKVF 190
               + K+F
Sbjct: 474 QSSEIPKIF 482


>At1g59800.1 68414.m06733 cullin-related similar to cullin 3 [Homo
           sapiens] GI:3639052
          Length = 255

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 176 LIERWASHKLLAKVFSERIKEKLDKFDEK 204
           L +RW +HKLL ++FS R+    D F  K
Sbjct: 91  LAKRWNAHKLLVRLFSRRLVYLDDSFLSK 119


>At5g50260.1 68418.m06224 cysteine proteinase, putative similar to
           cysteine endopeptidase precursor CysEP GI:2944446 from
           [Ricinus communis]
          Length = 361

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 161 DFYRNRTTPANVKFSLIERWASHKLLAKVFSERIK 195
           DF+       N  + L ERW SH  +A+   E+ K
Sbjct: 22  DFHNKDVESENSLWELYERWRSHHTVARSLEEKAK 56


>At1g72860.1 68414.m08427 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1163

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 278 QGVKHLILVPVAFVNEHIETLHELDIEYCDEVAKELRTISELS 320
           QG K L  +P +    ++  L  LD+ YC+E+A  + TI EL+
Sbjct: 692 QGCKRLKKIPESI--SYLTRLTTLDVSYCEELASYI-TIRELN 731


>At5g04020.1 68418.m00382 calmodulin-binding protein-related (PICBP)
            contains similarity to potato calmodulin-binding protein
            PCBP GI:17933110 from [Solanum tuberosum]
          Length = 1495

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 55   PVQSKLGPWIASRRTEEVKKKYSEIGGGSPILKWTNSQGSLLTQALDQMLPESAP 109
            P   ++ PW     TE+++ ++ EIGG        NS+  +L  AL Q +   AP
Sbjct: 1172 PKTPRVLPWEPDPETEKIRLRHQEIGGK------RNSEEWMLDYALRQAISTLAP 1220


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,953,488
Number of Sequences: 28952
Number of extensions: 337676
Number of successful extensions: 934
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 918
Number of HSP's gapped (non-prelim): 11
length of query: 329
length of database: 12,070,560
effective HSP length: 81
effective length of query: 248
effective length of database: 9,725,448
effective search space: 2411911104
effective search space used: 2411911104
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)