GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001648-TA|BGIBMGA001648-PA|IPR001015|Ferrochelatase
         (329 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   1.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.8  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    23   4.8  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   4.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   4.8  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 90  NSQGSLLTQALDQMLPESAP 109
           N+ G  L +ALD +LP S P
Sbjct: 222 NADGKTLIEALDAILPPSRP 241


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 101 DQMLPESAPHKHYVAF 116
           D  LPE   ++HY AF
Sbjct: 463 DNFLPEKTANRHYYAF 478


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 71  EVKKKYSEIGGGSPILKWTNSQGSLLTQALDQMLPESAP 109
           EV  K     G +   K    +G  L +ALD +LP + P
Sbjct: 130 EVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRP 168


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 71  EVKKKYSEIGGGSPILKWTNSQGSLLTQALDQMLPESAP 109
           EV  K     G +   K    +G  L +ALD +LP + P
Sbjct: 146 EVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRP 184


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query: 151 TTGSSLNAIADFYRNRTTPANVKFSLIERWASHKLLAKVF 190
           +TG    AI  +  N  +P N  +SL   W +   LA  F
Sbjct: 411 STGEMKEAITQWQGNPISPLNDWYSLASSWPALVPLALGF 450


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 71  EVKKKYSEIGGGSPILKWTNSQGSLLTQALDQMLPESAP 109
           EV  K     G +   K    +G  L +ALD +LP + P
Sbjct: 203 EVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRP 241


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,698
Number of Sequences: 429
Number of extensions: 4288
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 6
length of query: 329
length of database: 140,377
effective HSP length: 58
effective length of query: 271
effective length of database: 115,495
effective search space: 31299145
effective search space used: 31299145
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)