GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001647-TA|BGIBMGA001647-PA|undefined
         (51 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   1.2  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    18   6.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    18   8.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 1.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 1    MLLMLREIYADMGVDPDSTVP 21
            +L  +R + AD G     T+P
Sbjct: 1756 LLTTIRNVLADAGTGQQETIP 1776


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 18.2 bits (35), Expect = 6.6
 Identities = 9/23 (39%), Positives = 10/23 (43%)

Query: 7   EIYADMGVDPDSTVPQQSLTVQR 29
           E Y   G+D D   PQ   T  R
Sbjct: 133 ETYNYDGLDVDWEYPQDKATFNR 155


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
          (isoform A) protein.
          Length = 549

 Score = 17.8 bits (34), Expect = 8.7
 Identities = 7/26 (26%), Positives = 14/26 (53%)

Query: 24 SLTVQRTRLQRQDGVITRESPTTSHS 49
          S+ ++   + R+D V+  +S    HS
Sbjct: 11 SMDIKHEMIYREDDVLLVKSEPQLHS 36


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.128    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9865
Number of Sequences: 317
Number of extensions: 269
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 51
length of database: 114,650
effective HSP length: 32
effective length of query: 19
effective length of database: 104,506
effective search space:  1985614
effective search space used:  1985614
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)
S2: 34 (17.8 bits)