GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001647-TA|BGIBMGA001647-PA|undefined
         (51 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   0.70 
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    24   2.8  
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom...    23   6.5  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    23   6.5  

>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.8 bits (54), Expect = 0.70
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 12  MGVDPDSTVPQQSLTVQRTRLQRQDGVITRESPTTSHSAV 51
           +G D  ST P +    Q TR + +  +I+ +  TTS   V
Sbjct: 85  VGSDGVSTTPDEYFEQQSTRSRSKPRIISNKETTTSKDVV 124


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 22  QQSLTVQRTRLQRQDGVIT 40
           + +L   +TRLQ+QDG IT
Sbjct: 83  ENALIDWQTRLQKQDGAIT 101


>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 12  MGVDPDSTVPQQSLTVQRTRLQRQDGVITRE 42
           + +D  STV  +SL++ R     Q G++  E
Sbjct: 82  LDLDATSTVWAESLSINREASISQSGIVDNE 112


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 9   YADMGVDPDSTVPQQSLTVQRTRLQRQDGVITRESPT 45
           YA    DP  TVP QS  +Q + L  +   ++   PT
Sbjct: 74  YAKTYDDPSFTVPNQS--IQGSSLPSEKPYLSSNQPT 108


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.128    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,975
Number of Sequences: 5004
Number of extensions: 4770
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 4
length of query: 51
length of database: 2,362,478
effective HSP length: 32
effective length of query: 19
effective length of database: 2,202,350
effective search space: 41844650
effective search space used: 41844650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)