GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001647-TA|BGIBMGA001647-PA|undefined
         (51 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021346-1|CAA16154.1|  823|Caenorhabditis elegans Hypothetical ...    27   1.2  
AF098997-2|AAC68722.2|  796|Caenorhabditis elegans Hypothetical ...    25   4.9  
Z81076-3|CAB03052.1|  394|Caenorhabditis elegans Hypothetical pr...    25   6.4  
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    25   6.4  
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    25   8.5  
AL132949-10|CAB61082.1|  721|Caenorhabditis elegans Hypothetical...    25   8.5  

>AL021346-1|CAA16154.1|  823|Caenorhabditis elegans Hypothetical
           protein H37A05.1 protein.
          Length = 823

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 16  PDSTVPQQSLTVQRTRLQRQDGVITRESP 44
           PD TV      V+RT +++ DG  TR++P
Sbjct: 189 PDLTVLAAETEVERTDIKKSDGKRTRKTP 217


>AF098997-2|AAC68722.2|  796|Caenorhabditis elegans Hypothetical
          protein T10D4.6 protein.
          Length = 796

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 16 PDSTVPQQSLTVQRTRLQRQDGVITRESPTTS 47
          P ++V +Q+   Q  +LQ  + VI  E+PTTS
Sbjct: 65 PQASVAEQAGISQIPQLQHNNEVIGIEAPTTS 96


>Z81076-3|CAB03052.1|  394|Caenorhabditis elegans Hypothetical
           protein F35C5.3 protein.
          Length = 394

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 11  DMGVDPDSTVPQQSLTVQRTRLQRQDGVITRESPTTSHSAV 51
           +  V PD+TV Q+S   Q T +  Q+  +++E+  +  + V
Sbjct: 187 ETNVSPDTTVSQESTVSQDTTVS-QETTLSQETTVSQETTV 226


>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 6 protein.
          Length = 1254

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 14  VDPDSTVPQQSLTVQRTRLQRQDGVITRESPTTSHSA 50
           +  + +  Q+  T   T  ++     T E PTTS SA
Sbjct: 812 ITTEKSTTQEETTTTTTTTEKTTSKTTTEKPTTSESA 848


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical
           protein F32H2.5 protein.
          Length = 2586

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 7/15 (46%), Positives = 14/15 (93%)

Query: 4   MLREIYADMGVDPDS 18
           +L+E+Y++ G+DP+S
Sbjct: 281 LLQEVYSEAGIDPNS 295


>AL132949-10|CAB61082.1|  721|Caenorhabditis elegans Hypothetical
           protein Y53F4B.12 protein.
          Length = 721

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 1   MLLMLREIYADMGVDPDSTVPQQSLTVQRTRLQRQDGVITRES 43
           +L+ L+  Y +    P+ T   +S+  +RTR+   DGV   +S
Sbjct: 392 LLVYLQHYYPEQIGIPEETSNYKSIGKKRTRVHIDDGVSIDDS 434


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.128    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,116,956
Number of Sequences: 27539
Number of extensions: 28067
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 7
length of query: 51
length of database: 12,573,161
effective HSP length: 32
effective length of query: 19
effective length of database: 11,691,913
effective search space: 222146347
effective search space used: 222146347
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)