GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001646-TA|BGIBMGA001646-PA|IPR004177|DDHD, IPR004170|WWE
         (2399 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   4.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   4.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   4.8  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    25   4.8  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    25   8.3  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    25   8.3  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 482  TLNQPTTTNLSLQPDLISSVTMHIPPTTIPSANPMSTGQHV 522
            T  +PTTTN   Q   I    + +P    PS  P   GQ+V
Sbjct: 1070 TTTRPTTTNWPTQGTTIPPPAVVMPEVDKPS-QPCEPGQYV 1109



 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 223  TTGVDSAAHLAMPPHQPQTSSVPLGPTATEKPYPEPSTGRIQYF 266
            TT  +  +    P  QP     P+ PT+ + P PE    +  YF
Sbjct: 1355 TTSWNPGSTTNYPEWQPTEWHPPIPPTSEKPPLPEELKPQSGYF 1398


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 1520 EEIDAVKQAANRLGDIK-ISELQIPETKPLPDPMNFFSSPEVSRAEP 1565
            ++ +++ Q+ +  G +  +S L  P    LP P    +SP VS A P
Sbjct: 672  DDAESLNQSISSPGALSGLSSLTSPGGMVLPSPSTSVASPSVSVASP 718


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 1520 EEIDAVKQAANRLGDIK-ISELQIPETKPLPDPMNFFSSPEVSRAEP 1565
            ++ +++ Q+ +  G +  +S L  P    LP P    +SP VS A P
Sbjct: 564  DDAESLNQSISSPGALSGLSSLTSPGGMVLPSPSTSVASPSVSVASP 610


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
            candidate 5 protein.
          Length = 522

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 1700 YCCDF-NTNVFNINEVSYKVKATANDNNNAAGSKGCDVSMERVNAANKNVTINLEGATDG 1758
            + CD     + N+  ++YK++A   DN      K  D S     AA +   +N      G
Sbjct: 264  FLCDLIRREIANVQVLAYKIEAKRRDNEIKMFVKIVDASCRNFTAA-RFFELNRRTIL-G 321

Query: 1759 VTDDAVTVLSEEVGREWYTRI 1779
            V++  +T L   V +  Y ++
Sbjct: 322  VSNAVITFLIVMVQKASYEKL 342


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 787 SYYQSEGQNYQQQAQTIYSSTML---YPGSNLNENISNTSTYHTPGFNITTETAHTTPHA 843
           SYY S      QQA    ++  +   Y G +    +        P   +    +H  PH+
Sbjct: 3   SYYNSTNMYRHQQAVAAPANAPMHSWYAGYHQGAQMGPEQQMWEP--QMWHHHSHMPPHS 60

Query: 844 IITDSNIKFPALVPS 858
           +   +N +FP  V S
Sbjct: 61  VFAANNAEFPEFVHS 75


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 787 SYYQSEGQNYQQQAQTIYSSTML---YPGSNLNENISNTSTYHTPGFNITTETAHTTPHA 843
           SYY S      QQA    ++  +   Y G +    +        P   +    +H  PH+
Sbjct: 3   SYYNSTNMYRHQQAVAAPANAPMHSWYAGYHQGAQMGPEQQMWEP--QMWHHHSHMPPHS 60

Query: 844 IITDSNIKFPALVPS 858
           +   +N +FP  V S
Sbjct: 61  VFAANNAEFPEFVHS 75


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.131    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 568,055
Number of Sequences: 317
Number of extensions: 26201
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 49
Number of HSP's gapped (non-prelim): 9
length of query: 2399
length of database: 114,650
effective HSP length: 68
effective length of query: 2331
effective length of database: 93,094
effective search space: 217002114
effective search space used: 217002114
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)