GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001645-TA|BGIBMGA001645-PA|undefined
         (271 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    27   2.9  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    27   2.9  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   3.8  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    26   6.6  

>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 2   DHNYSVEPQNKENPDNISRLNVRQLVDTLGYLSL----KNLQRKQLWVVKVETDKAEASI 57
           +H++      KE  D +   NVR  +D LGYL       + +R  + + KV++++ E + 
Sbjct: 270 EHDFYCRNYIKEG-DYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNE 328

Query: 58  TQSEQVITKMQDSKQTIEIIPQTSTSADQ 86
            +S + +  +Q+ +  IE + +  + + Q
Sbjct: 329 IKSRKRL-YVQNCQNGIEAVIEKLSQSQQ 356


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)

Query: 241 DWVIENAISYDND 253
           DW++ENAI YD D
Sbjct: 245 DWIVENAIYYDAD 257


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 4/102 (3%)

Query: 2    DHNYSVEPQNKENPDNISRLNVRQLVDTLGY-LSLKNLQRKQLWVVKVETDKAEASITQS 60
            + N S+    + N + I+ L  R+ ++TL   L+   L ++QL   +++T+KA     ++
Sbjct: 1237 ESNKSLRENLERNEEVITEL--REKIETLKTDLANFRLNKEQL-ESQLQTEKAAVKKLEN 1293

Query: 61   EQVITKMQDSKQTIEIIPQTSTSADQPASEVLQIMDENAIPE 102
                 K  + +  + +   TSTS+D    +   +  EN I E
Sbjct: 1294 SNEEYKRHNQEILLSLNSSTSTSSDASRLKNELVSKENLIEE 1335


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 48  VETDKAEASITQSEQVITKMQDSKQTIEIIPQTSTSADQPASEVLQIMDENAIPENF 104
           +E ++ E S+ +  Q +TK+    Q +      STS     ++ L+  D++ +   F
Sbjct: 425 MEGEEQEPSLAERLQNLTKLDQQAQALSTQISASTSLSTVLTQALKTNDQSLLESCF 481


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.129    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,190,985
Number of Sequences: 5004
Number of extensions: 45312
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 94
Number of HSP's gapped (non-prelim): 4
length of query: 271
length of database: 2,362,478
effective HSP length: 72
effective length of query: 199
effective length of database: 2,002,190
effective search space: 398435810
effective search space used: 398435810
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 53 (25.4 bits)