GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001645-TA|BGIBMGA001645-PA|undefined
         (271 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0570 - 18614227-18614574,18614729-18614842,18614933-186151...    31   0.99 
02_01_0485 + 3487578-3487635,3488281-3488399,3488600-3488698,348...    30   1.7  
06_03_1122 - 27775141-27775333,27775414-27775604,27775907-277770...    30   2.3  
12_02_0882 - 23978169-23979251                                         29   4.0  
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687...    29   5.3  
01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238...    28   9.2  

>09_04_0570 -
           18614227-18614574,18614729-18614842,18614933-18615130,
           18615290-18615463,18615546-18615752,18615886-18616180,
           18616269-18617275
          Length = 780

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 22/101 (21%)

Query: 7   VEPQNKENPDNISRLNVRQLVDT-LGYLSLKNLQRKQLWVVKVETDKAEASITQSEQVIT 65
           V+  +KEN     R+N  + V T L Y+S  NLQ K        + K             
Sbjct: 63  VKKDSKENSPRSGRINSNRQVQTKLQYISSNNLQSK--------SPKPN----------- 103

Query: 66  KMQDSKQTIEII-PQTSTSADQPASEVLQIMDENAIPENFI 105
           K  D  +TIEI  P T T    P+SEV + MD+  I EN +
Sbjct: 104 KTSDGAKTIEITKPDTVTVPSCPSSEVSEEMDDKPI-ENIV 143


>02_01_0485 +
           3487578-3487635,3488281-3488399,3488600-3488698,
           3488795-3488851,3488954-3489109,3489227-3489311,
           3489489-3489579,3489693-3489857,3489923-3490045,
           3490244-3490319,3490486-3490633,3490769-3491934,
           3492041-3492231,3492321-3492513
          Length = 908

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 54  EASIT-QSEQVITKMQDSKQTIEIIPQTSTSADQPASEVLQIMDENAIPENFIYXXXXXX 112
           E++IT +   + +++++   T   IPQ ST A  P  E L   D ++ P+N         
Sbjct: 649 ESTITSRPHDISSQIENFDLTPSSIPQNSTLAPLPGRECLVDQDGSSDPQNHFLFGVNID 708

Query: 113 XXXXXXVKEIPSSGNQEWIVNIIPEETKN 141
                    IPS  N+    + IP  T N
Sbjct: 709 SQSLLMQDGIPSLHNEN-SSSTIPYSTSN 736


>06_03_1122 -
           27775141-27775333,27775414-27775604,27775907-27777099,
           27777206-27777353,27777534-27777609,27777696-27777818,
           27777886-27778050,27778169-27778259,27778580-27778664,
           27778745-27778900,27778992-27779048,27779138-27779236,
           27779381-27779499,27780145-27780202
          Length = 917

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 54  EASITQSEQVITKMQDSKQTIEIIPQTSTSADQPASEVLQIMDENAIPENFI 105
           E+ +    QV ++M+    T   IPQ+S  A  P    L   D N+ P+N +
Sbjct: 658 ESLLPSRPQVTSQMEQLDSTAPSIPQSSALAPLPGRGCLVDQDGNSDPQNHL 709


>12_02_0882 - 23978169-23979251
          Length = 360

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 9   PQNKENPDNISRLNVRQLVDTLGYLSLKNLQRKQLWVVKVETDKAEASITQSEQVITKMQ 68
           P    +   +  L+V  + D  G +S      K+   V V  D       Q E  +T+MQ
Sbjct: 244 PHKNSSDHEVPTLSVSSMDDPDGLVSTDTNSDKETETVNVGIDINIPE--QRESSVTRMQ 301

Query: 69  DSKQTIEIIPQTSTSADQ-PASEVLQIMDENAI 100
           + K  + ++P+  +S  + P   V    D N++
Sbjct: 302 NEKLGLNLLPRNDSSGHEVPILSVSSTDDLNSL 334


>06_03_1496 -
           30567968-30568210,30568345-30568513,30568635-30568736,
           30569087-30571855,30572402-30572430,30572546-30572659,
           30572735-30572846,30574730-30574845,30574928-30575068,
           30575121-30575243,30575346-30575478,30575842-30575972,
           30576065-30576300,30577073-30577376
          Length = 1573

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 10  QNKENPDNISRLNVRQLVDTLGYLSLKNLQRKQLWVVKVETDKA-EASITQSEQVITKMQ 68
           QNK+  +NI+++    L  ++     +    +     ++E + A E     S Q  ++ +
Sbjct: 876 QNKDVLENINKVAQHNLTRSMKINQRRKACNQHSPDERIEMEHAKENDALNSCQAFSRYK 935

Query: 69  DSKQTIEIIPQTSTSADQPASE 90
             KQT  +  QTS S+DQ  S+
Sbjct: 936 YKKQTSILYQQTSLSSDQGTSQ 957


>01_01_0292 -
           2387653-2387711,2388061-2388684,2388814-2389104,
           2389338-2389390,2390496-2390968,2391090-2391432,
           2391793-2391911,2392081-2392512,2392657-2392747,
           2392833-2392942,2393681-2393875,2394581-2394622,
           2395144-2395268,2395856-2395926,2396047-2396147
          Length = 1042

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 233 DDIKTEPDDWVIENAISYDNDEFDD 257
           D   T  +DW++   +S DND+ DD
Sbjct: 502 DTFGTRDEDWLVYKKMSKDNDDDDD 526


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.310    0.129    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,754,499
Number of Sequences: 37544
Number of extensions: 232931
Number of successful extensions: 451
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 448
Number of HSP's gapped (non-prelim): 7
length of query: 271
length of database: 14,793,348
effective HSP length: 81
effective length of query: 190
effective length of database: 11,752,284
effective search space: 2232933960
effective search space used: 2232933960
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 59 (27.9 bits)