GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001645-TA|BGIBMGA001645-PA|undefined
         (271 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16340| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               30   2.3  
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_23747| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_1159| Best HMM Match : 7tm_3 (HMM E-Value=1.4e-28)                  29   4.1  
SB_24753| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_8251| Best HMM Match : P53 (HMM E-Value=0.059)                      29   5.4  
SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077)               28   7.1  
SB_2885| Best HMM Match : Ras (HMM E-Value=0.0059)                     28   9.4  

>SB_16340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 27  VDTLGYLSLKNLQRKQLWVVKVETDKAEASITQSEQVITKMQDSKQTIEIIPQTSTSADQ 86
           +DTL  L  + LQ+ + WV K+ET+ +E  +   + + T M+  K+  +   +T     +
Sbjct: 113 MDTLSRLK-EQLQKSESWVAKLETELSELRLAGEKNITTAMEQQKRLKDSYDETVKRNQE 171

Query: 87  PASEVLQIMDE 97
              +VL++ DE
Sbjct: 172 LEEQVLKMADE 182


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/44 (27%), Positives = 26/44 (59%)

Query: 54 EASITQSEQVITKMQDSKQTIEIIPQTSTSADQPASEVLQIMDE 97
          EAS+ Q+E+ + ++Q+++Q IE + Q      +    ++ + DE
Sbjct: 44 EASLIQAEETLKELQENQQYIEKVEQLEKLLGEKEEGIMALADE 87


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/88 (20%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 19   SRLNVRQLVDTLGYLSLKNLQRKQLWVVKVETDKAEASITQSEQVITKMQDSKQTIEIIP 78
            +RLN  ++ D    LS+   +++QL     E D+A A + ++ + + +++    +++   
Sbjct: 1567 ARLNQGEIDDLKLSLSISQAEKQQLQTRIDELDRAHADLRETAEEVQRIKKENASLKAQV 1626

Query: 79   QTSTSADQPASEVL-QIMDENAIPENFI 105
            +      +  SE+  ++++  A+ E FI
Sbjct: 1627 KELGEIRRSVSELKGELVEAEALKEKFI 1654


>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2672

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 45   VVKVETDKAEASITQSEQVITKMQDSKQTIEIIPQTSTSADQPASEVLQIMDENAIPE 102
            ++K  T+K + + T+ E+V+++  DS+  I+ + +T +  +Q  ++     D+N I E
Sbjct: 960  LLKETTEKLDVAETRLEKVLSENSDSQSKIQRLQETVSHVEQRLTD-SNTSDQNLISE 1016


>SB_23747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 10  QNKENPDNISR-LNVRQLVDTLGYLSLKNLQRKQLWVV---------KVETDKAEASITQ 59
           Q+KEN   + R +   + V   G + +K+L RK    +         K   +K    I +
Sbjct: 579 QSKENGSTVRRNVQFAKKVQVAGRVCVKSLSRKGKQAMGKANRRHHAKQVREKKRGEILE 638

Query: 60  SEQVITKMQDSKQTIEIIPQTSTSADQPASEVLQIMDENA 99
            ++ I K       I I+P +ST     A ++L+  DE A
Sbjct: 639 QKRKIGKQGSPPHVIAILPLSSTCNVSSALQLLRECDEEA 678


>SB_1159| Best HMM Match : 7tm_3 (HMM E-Value=1.4e-28)
          Length = 562

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/92 (18%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 8   EPQNKENPDNISRLNVRQLVDTLGYLSLKNLQRKQLWVVKVETDKAEASITQSEQVITKM 67
           +P+N    ++++R N+++ ++T+G +   N   +QL   K +  K+E  +    Q +   
Sbjct: 456 QPENVFTSNSLARANLQETMNTMGTIDELN---RQLADFKAKLSKSETEVETLRQRLRHY 512

Query: 68  QDSKQTIEIIPQTSTSADQPASEVLQIMDENA 99
           ++           +T  D  A+   +   +N+
Sbjct: 513 EEGPSASIASMSETTGEDSVATATAETCGQNS 544


>SB_24753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 60 SEQVITKMQDSKQTIEIIPQTSTSADQPASEVLQIMDE 97
          SE  +T  ++  + IE + +T+TS  + A+E L   DE
Sbjct: 10 SENELTDEENEPECIESLQETATSISEAANEFLPYQDE 47


>SB_8251| Best HMM Match : P53 (HMM E-Value=0.059)
          Length = 329

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 152 GKKKRHFTADVNEITLQGDFENYYILPDVDPSVGVEITTSY 192
           G+KKR  + DV+  T    F N  + P   PS G E  T Y
Sbjct: 143 GRKKRKISGDVSSSTCVSPFSNNELSP--SPSRGAEDNTVY 181


>SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077)
          Length = 599

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/112 (16%), Positives = 45/112 (40%), Gaps = 3/112 (2%)

Query: 49  ETDKAEASITQSEQVITKMQDSKQTIEIIPQ---TSTSADQPASEVLQIMDENAIPENFI 105
           +  + +  I + +Q IT + + ++ + +      TST A+   + +  ++D         
Sbjct: 264 DISRVQCDIKEYQQRITALSNERERVALEMNKRDTSTLAEAHGNAMASLIDTKGTMRRLQ 323

Query: 106 YXXXXXXXXXXXXVKEIPSSGNQEWIVNIIPEETKNKYAYIKHCSTGKKKRH 157
                        +KE+ S  NQ   +    + T  + + ++H +  K++ H
Sbjct: 324 ATQTTMEKTLEERLKEVDSLNNQLKEIKTSVQNTTAENSRLQHMAEAKQREH 375


>SB_2885| Best HMM Match : Ras (HMM E-Value=0.0059)
          Length = 141

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 10/104 (9%)

Query: 1   MDHNYSVEPQNKENPDNISRLNVRQLVDTLGYLSLKNLQRKQLWVVKVETDKAEASITQS 60
           ++ N+   P   +N D+ISRL       ++G         K  W +K    +A      +
Sbjct: 29  LELNFLSVPGEPDNADSISRLRAIATAQSIGARQYVECCAKMRWNIKEVFQQA------A 82

Query: 61  EQVITKMQDSKQTIEIIPQTST---SADQPASEVLQIMDENAIP 101
           E +++K +DS  T    PQ+     S     S    +MD N+ P
Sbjct: 83  EAILSK-EDSNNTEAPKPQSMLRRFSRFARRSSAADVMDMNSSP 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.310    0.129    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,248,578
Number of Sequences: 59808
Number of extensions: 310546
Number of successful extensions: 651
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 10
length of query: 271
length of database: 16,821,457
effective HSP length: 81
effective length of query: 190
effective length of database: 11,977,009
effective search space: 2275631710
effective search space used: 2275631710
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 59 (27.9 bits)