GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001645-TA|BGIBMGA001645-PA|undefined
         (271 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

K02623-1|AAA28971.1|  284|Drosophila melanogaster protein ( D.me...    31   1.7  
K02622-1|AAA28970.1|  257|Drosophila melanogaster protein ( D.me...    31   1.7  
K03277-2|AAA28974.1|  284|Drosophila melanogaster protein ( D. m...    30   3.9  
K03277-1|AAA28973.1|  284|Drosophila melanogaster protein ( D. m...    30   3.9  
BT029283-1|ABK30920.1|  361|Drosophila melanogaster IP16005p pro...    30   3.9  
AY071087-1|AAL48709.1|  284|Drosophila melanogaster RE15528p pro...    30   3.9  
AE014297-2004|AAN13654.2|  284|Drosophila melanogaster CG4843-PC...    30   3.9  
AE014297-2003|AAN13653.1|  284|Drosophila melanogaster CG4843-PB...    30   3.9  
AE014297-2002|AAN13652.1|  284|Drosophila melanogaster CG4843-PA...    30   3.9  
BT015206-1|AAT94435.1|  932|Drosophila melanogaster RE62451p pro...    29   5.1  
U22295-1|AAB03641.1|  622|Drosophila melanogaster unknown protei...    29   9.0  
BT024232-1|ABC86294.1| 1047|Drosophila melanogaster LD16032p pro...    29   9.0  
AY122067-1|AAM52579.1|  331|Drosophila melanogaster AT09608p pro...    29   9.0  
AE014297-1204|AAF54559.2| 2762|Drosophila melanogaster CG14692-P...    29   9.0  
AE014296-2892|AAF49353.2| 1324|Drosophila melanogaster CG7692-PA...    29   9.0  
AE013599-470|AAF59216.3|  331|Drosophila melanogaster CG30491-PA...    29   9.0  

>K02623-1|AAA28971.1|  284|Drosophila melanogaster protein (
           D.melanogaster tropomyosinisoform 127 gene, exon 3. ).
          Length = 284

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 1   MDHNYSVEPQNKENPDNISRLN--VRQLVDTLGYLSLKNLQRK-QLWVVKVETDKAEASI 57
           +D   + E Q K+      +LN  VR L      + +  +  K QL     E ++ E  +
Sbjct: 19  IDKADTCENQAKDANSRADKLNEEVRDLEKKFVQVEIDLVTAKEQLEKANTELEEKEKLL 78

Query: 58  TQSEQVIT----KMQDSKQTIEIIPQTSTSADQPASEVLQIMDEN 98
           T +E  +     K+Q +++ +E   + ST+A Q   E  Q  DEN
Sbjct: 79  TATESEVATLNRKVQQTEEDLEKSEERSTTAQQKLLEATQSADEN 123


>K02622-1|AAA28970.1|  257|Drosophila melanogaster protein (
           D.melanogaster genefor tropomyosin isoforms 127 and 129,
           exons 1 and 2. ).
          Length = 257

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 1   MDHNYSVEPQNKENPDNISRLN--VRQLVDTLGYLSLKNLQRK-QLWVVKVETDKAEASI 57
           +D   + E Q K+      +LN  VR L      + +  +  K QL     E ++ E  +
Sbjct: 19  IDKADTCENQAKDANSRADKLNEEVRDLEKKFVQVEIDLVTAKEQLEKANTELEEKEKLL 78

Query: 58  TQSEQVIT----KMQDSKQTIEIIPQTSTSADQPASEVLQIMDEN 98
           T +E  +     K+Q +++ +E   + ST+A Q   E  Q  DEN
Sbjct: 79  TATESEVATLNRKVQQTEEDLEKSEERSTTAQQKLLEATQSADEN 123


>K03277-2|AAA28974.1|  284|Drosophila melanogaster protein ( D.
           melanogaster tropomyosinI gene, exons 2-5, complete cds.
           ).
          Length = 284

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 1   MDHNYSVEPQNKENPDNISRLN--VRQLVDTLGYLSLKNLQRK-QLWVVKVETDKAEASI 57
           +D   + E Q K+      +LN  VR L      + +  +  K QL     E ++ E  +
Sbjct: 19  IDKADTCENQAKDANSRADKLNEEVRDLEKKFVQVEIDLVTAKEQLEKANTELEEKEKLL 78

Query: 58  TQSEQVIT----KMQDSKQTIEIIPQTSTSADQPASEVLQIMDEN 98
           T +E  +     K+Q  ++ +E   + ST+A Q   E  Q  DEN
Sbjct: 79  TATESEVATQNRKVQQIEEDLEKSEERSTTAQQKLLEATQSADEN 123


>K03277-1|AAA28973.1|  284|Drosophila melanogaster protein ( D.
           melanogaster tropomyosinI gene, exons 2-5, complete cds.
           ).
          Length = 284

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 1   MDHNYSVEPQNKENPDNISRLN--VRQLVDTLGYLSLKNLQRK-QLWVVKVETDKAEASI 57
           +D   + E Q K+      +LN  VR L      + +  +  K QL     E ++ E  +
Sbjct: 19  IDKADTCENQAKDANSRADKLNEEVRDLEKKFVQVEIDLVTAKEQLEKANTELEEKEKLL 78

Query: 58  TQSEQVIT----KMQDSKQTIEIIPQTSTSADQPASEVLQIMDEN 98
           T +E  +     K+Q  ++ +E   + ST+A Q   E  Q  DEN
Sbjct: 79  TATESEVATQNRKVQQIEEDLEKSEERSTTAQQKLLEATQSADEN 123


>BT029283-1|ABK30920.1|  361|Drosophila melanogaster IP16005p
           protein.
          Length = 361

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 1   MDHNYSVEPQNKENPDNISRLN--VRQLVDTLGYLSLKNLQRK-QLWVVKVETDKAEASI 57
           +D   + E Q K+      +LN  VR L      + +  +  K QL     E ++ E  +
Sbjct: 19  IDKADTCENQAKDANSRADKLNEEVRDLEKKFVQVEIDLVTAKEQLEKANTELEEKEKLL 78

Query: 58  TQSEQVIT----KMQDSKQTIEIIPQTSTSADQPASEVLQIMDEN 98
           T +E  +     K+Q  ++ +E   + ST+A Q   E  Q  DEN
Sbjct: 79  TATESEVATQNRKVQQIEEDLEKSEERSTTAQQKLLEATQSADEN 123


>AY071087-1|AAL48709.1|  284|Drosophila melanogaster RE15528p
           protein.
          Length = 284

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 1   MDHNYSVEPQNKENPDNISRLN--VRQLVDTLGYLSLKNLQRK-QLWVVKVETDKAEASI 57
           +D   + E Q K+      +LN  VR L      + +  +  K QL     E ++ E  +
Sbjct: 19  IDKADTCENQAKDANSRADKLNEEVRDLEKKFVQVEIDLVTAKEQLEKANTELEEKEKLL 78

Query: 58  TQSEQVIT----KMQDSKQTIEIIPQTSTSADQPASEVLQIMDEN 98
           T +E  +     K+Q  ++ +E   + ST+A Q   E  Q  DEN
Sbjct: 79  TATESEVATQNRKVQQIEEDLEKSEERSTTAQQKLLEATQSADEN 123


>AE014297-2004|AAN13654.2|  284|Drosophila melanogaster CG4843-PC,
           isoform C protein.
          Length = 284

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 1   MDHNYSVEPQNKENPDNISRLN--VRQLVDTLGYLSLKNLQRK-QLWVVKVETDKAEASI 57
           +D   + E Q K+      +LN  VR L      + +  +  K QL     E ++ E  +
Sbjct: 19  IDKADTCENQAKDANSRADKLNEEVRDLEKKFVQVEIDLVTAKEQLEKANTELEEKEKLL 78

Query: 58  TQSEQVIT----KMQDSKQTIEIIPQTSTSADQPASEVLQIMDEN 98
           T +E  +     K+Q  ++ +E   + ST+A Q   E  Q  DEN
Sbjct: 79  TATESEVATQNRKVQQIEEDLEKSEERSTTAQQKLLEATQSADEN 123


>AE014297-2003|AAN13653.1|  284|Drosophila melanogaster CG4843-PB,
           isoform B protein.
          Length = 284

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 1   MDHNYSVEPQNKENPDNISRLN--VRQLVDTLGYLSLKNLQRK-QLWVVKVETDKAEASI 57
           +D   + E Q K+      +LN  VR L      + +  +  K QL     E ++ E  +
Sbjct: 19  IDKADTCENQAKDANSRADKLNEEVRDLEKKFVQVEIDLVTAKEQLEKANTELEEKEKLL 78

Query: 58  TQSEQVIT----KMQDSKQTIEIIPQTSTSADQPASEVLQIMDEN 98
           T +E  +     K+Q  ++ +E   + ST+A Q   E  Q  DEN
Sbjct: 79  TATESEVATQNRKVQQIEEDLEKSEERSTTAQQKLLEATQSADEN 123


>AE014297-2002|AAN13652.1|  284|Drosophila melanogaster CG4843-PA,
           isoform A protein.
          Length = 284

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 1   MDHNYSVEPQNKENPDNISRLN--VRQLVDTLGYLSLKNLQRK-QLWVVKVETDKAEASI 57
           +D   + E Q K+      +LN  VR L      + +  +  K QL     E ++ E  +
Sbjct: 19  IDKADTCENQAKDANSRADKLNEEVRDLEKKFVQVEIDLVTAKEQLEKANTELEEKEKLL 78

Query: 58  TQSEQVIT----KMQDSKQTIEIIPQTSTSADQPASEVLQIMDEN 98
           T +E  +     K+Q  ++ +E   + ST+A Q   E  Q  DEN
Sbjct: 79  TATESEVATQNRKVQQIEEDLEKSEERSTTAQQKLLEATQSADEN 123


>BT015206-1|AAT94435.1|  932|Drosophila melanogaster RE62451p
           protein.
          Length = 932

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 14/62 (22%), Positives = 34/62 (54%)

Query: 41  KQLWVVKVETDKAEASITQSEQVITKMQDSKQTIEIIPQTSTSADQPASEVLQIMDENAI 100
           K L +  V TD A+ SI +++ +   +++SKQ  + I ++  + ++   E++    ++ +
Sbjct: 439 KLLEITTVSTDMADNSIEEAKLISQAIEESKQLPQAIEESKKNLNEDKVEIVDTDTDSDL 498

Query: 101 PE 102
            E
Sbjct: 499 EE 500


>U22295-1|AAB03641.1|  622|Drosophila melanogaster unknown protein
           protein.
          Length = 622

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 23/91 (25%), Positives = 36/91 (39%)

Query: 13  ENPDNISRLNVRQLVDTLGYLSLKNLQRKQLWVVKVETDKAEASITQSEQVITKMQDSKQ 72
           E  D+    ++ Q  D    L L+  Q+ +    +V+T        Q EQVI++ +    
Sbjct: 43  EFDDDEDEQSLEQFEDDDDSLELRPQQKPKRKQTQVQTQNQRRKFQQEEQVISQKRRQSV 102

Query: 73  TIEIIPQTSTSADQPASEVLQIMDENAIPEN 103
           T    P+      QP  E  Q  +E    EN
Sbjct: 103 TQNKKPKVQKKPVQPVVEESQDEEELDDDEN 133


>BT024232-1|ABC86294.1| 1047|Drosophila melanogaster LD16032p
           protein.
          Length = 1047

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 130 WIVNIIPEETKNKYAYIKHCSTGKKKRHFTADVNEITLQGDFENYYILPDVDPSVGVEIT 189
           W+       T + Y  ++ CS  KKKR    D+   T   + +   +   +D    V+IT
Sbjct: 520 WLTAFYLHPTSSNYNEVRRCSRIKKKRQ-EDDLLPATTPQNVKYELLSSTIDVDEIVKIT 578

Query: 190 TSYEP 194
             Y+P
Sbjct: 579 NHYDP 583


>AY122067-1|AAM52579.1|  331|Drosophila melanogaster AT09608p
           protein.
          Length = 331

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 138 ETKNKYAYIKHCSTGKKK--RHFTA 160
           ETKNKY Y + C    ++  RHF A
Sbjct: 92  ETKNKYVYCRQCDLASQESIRHFVA 116


>AE014297-1204|AAF54559.2| 2762|Drosophila melanogaster CG14692-PA
            protein.
          Length = 2762

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 51   DKAEASITQSEQVITKM---QDSKQTIEIIPQTSTSADQPASEVLQIMDENA 99
            DKA   +++ E+VI KM   +DSK + E I  T  S D+P    +  + E +
Sbjct: 2428 DKATVKLSKPEEVIEKMSQLRDSK-SYERISSTDPSFDEPVIRPISSLQEQS 2478


>AE014296-2892|AAF49353.2| 1324|Drosophila melanogaster CG7692-PA
           protein.
          Length = 1324

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 130 WIVNIIPEETKNKYAYIKHCSTGKKKRHFTADVNEITLQGDFENYYILPDVDPSVGVEIT 189
           W+       T + Y  ++ CS  KKKR    D+   T   + +   +   +D    V+IT
Sbjct: 520 WLTAFYLHPTSSNYNEVRRCSRIKKKRQ-EDDLLPATTPQNVKYELLSSTIDVDEIVKIT 578

Query: 190 TSYEP 194
             Y+P
Sbjct: 579 NHYDP 583


>AE013599-470|AAF59216.3|  331|Drosophila melanogaster CG30491-PA
           protein.
          Length = 331

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 138 ETKNKYAYIKHCSTGKKK--RHFTA 160
           ETKNKY Y + C    ++  RHF A
Sbjct: 92  ETKNKYVYCRQCDLASQESIRHFVA 116


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.310    0.129    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,092,276
Number of Sequences: 52641
Number of extensions: 445013
Number of successful extensions: 998
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 996
Number of HSP's gapped (non-prelim): 16
length of query: 271
length of database: 24,830,863
effective HSP length: 84
effective length of query: 187
effective length of database: 20,409,019
effective search space: 3816486553
effective search space used: 3816486553
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 61 (28.7 bits)