GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001645-TA|BGIBMGA001645-PA|undefined
         (271 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88177-2|AAB42291.1|  358|Caenorhabditis elegans Hypothetical pr...    32   0.38 
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    29   3.5  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    29   3.5  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    29   3.5  
U53180-1|AAK68285.1|  492|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>U88177-2|AAB42291.1|  358|Caenorhabditis elegans Hypothetical
           protein F53E10.5 protein.
          Length = 358

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 24/104 (23%), Positives = 53/104 (50%), Gaps = 4/104 (3%)

Query: 7   VEPQNKENPDNISRLNV--RQLVDTLGYLSLKNLQRKQLWVVKVE-TDKAEASIT-QSEQ 62
           +  +NKEN +++ +++    +L++ L      N ++ ++ +   + + K  A  + +S+ 
Sbjct: 208 ITEENKENIEHLQKMSTTAEKLLNDLKNNKAPNDEKGKMTIKGTKGSRKTRAKQSAESKT 267

Query: 63  VITKMQDSKQTIEIIPQTSTSADQPASEVLQIMDENAIPENFIY 106
           +  K++  +  IE     S + +Q A  V Q + EN IP N+ Y
Sbjct: 268 LAYKIRLGEVEIEKFQAISETLEQIAKNVAQFVLENGIPANYFY 311


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 21   LNVRQLVDTLGYLSLKNLQRK-QLWVVKVETDKAEASITQSEQVITKMQDSKQTIEIIPQ 79
            +N + L ++ G  + K +Q K +  ++K +T+KA++SI+++ + +TK     +  E  P 
Sbjct: 9159 VNKKSLPES-GLTTKKEIQGKPEKKIMKKKTEKADSSISETSETLTKDLTQTKQSEPEPA 9217

Query: 80   TSTSADQPASEV 91
              T+      EV
Sbjct: 9218 KRTTETSVQDEV 9229


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 21   LNVRQLVDTLGYLSLKNLQRK-QLWVVKVETDKAEASITQSEQVITKMQDSKQTIEIIPQ 79
            +N + L ++ G  + K +Q K +  ++K +T+KA++SI+++ + +TK     +  E  P 
Sbjct: 9179 VNKKSLPES-GLTTKKEIQGKPEKKIMKKKTEKADSSISETSETLTKDLTQTKQSEPEPA 9237

Query: 80   TSTSADQPASEV 91
              T+      EV
Sbjct: 9238 KRTTETSVQDEV 9249


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 21   LNVRQLVDTLGYLSLKNLQRK-QLWVVKVETDKAEASITQSEQVITKMQDSKQTIEIIPQ 79
            +N + L ++ G  + K +Q K +  ++K +T+KA++SI+++ + +TK     +  E  P 
Sbjct: 9179 VNKKSLPES-GLTTKKEIQGKPEKKIMKKKTEKADSSISETSETLTKDLTQTKQSEPEPA 9237

Query: 80   TSTSADQPASEV 91
              T+      EV
Sbjct: 9238 KRTTETSVQDEV 9249


>U53180-1|AAK68285.1|  492|Caenorhabditis elegans Hypothetical
           protein D1014.7 protein.
          Length = 492

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 27  VDTLGYLSLKNLQRKQLWVVKVETDKAEASITQSEQVITKMQDSKQTIEIIPQTSTSADQ 86
           +DT+  L + NL  K  WV+K   +   A+    +Q+I +M   K   + I Q     DQ
Sbjct: 318 LDTIKNLQIVNLHFKVQWVIK--QNNTPATYVNDKQIIDEMNFHK--YQNISQVGALWDQ 373

Query: 87  P 87
           P
Sbjct: 374 P 374


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.310    0.129    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,317,044
Number of Sequences: 27539
Number of extensions: 239369
Number of successful extensions: 576
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 557
Number of HSP's gapped (non-prelim): 23
length of query: 271
length of database: 12,573,161
effective HSP length: 80
effective length of query: 191
effective length of database: 10,370,041
effective search space: 1980677831
effective search space used: 1980677831
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 59 (27.9 bits)