GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001645-TA|BGIBMGA001645-PA|undefined
         (271 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39750.1 68418.m04815 MADS-box family protein contains Pfam p...    31   0.82 
At1g73020.1 68414.m08444 expressed protein contains Pfam profile...    31   0.82 
At5g06350.1 68418.m00711 expressed protein                             29   3.3  
At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot...    29   3.3  
At3g32902.1 68416.m04158 hypothetical protein                          29   3.3  
At2g22795.1 68415.m02704 expressed protein                             29   4.4  
At5g39810.1 68418.m04822 MADS-box family protein contains simila...    28   5.8  
At2g18630.1 68415.m02169 expressed protein unusual splice site a...    28   7.7  

>At5g39750.1 68418.m04815 MADS-box family protein contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain); MADS-box protein
           AGL81
          Length = 355

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 2/107 (1%)

Query: 61  EQVITKMQDSKQTIEIIPQTSTSADQPASEVLQIMDENAIPENFIYXXXXXXXXXXXXVK 120
           EQ +        T+  IP ++++ +Q  S +LQ  DE+ + +  +              +
Sbjct: 243 EQNMCMSNHGDATLSQIPLSASNLNQDFSALLQ--DESGLMQQELCGYDQNMFMNNNNFQ 300

Query: 121 EIPSSGNQEWIVNIIPEETKNKYAYIKHCSTGKKKRHFTADVNEITL 167
               S  Q+    ++ E   N Y  + H   G  +  FT+D+    L
Sbjct: 301 HSFVSNTQDHSAPVVQESVNNNYGLMPHVPCGYDQNLFTSDITNNNL 347


>At1g73020.1 68414.m08444 expressed protein contains Pfam profile
           PF04547: Protein of unknown function, DUF590; expression
           supported by MPSS
          Length = 558

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 142 KYAYIKHCSTGKKKRHFTADVNEITLQGDFENYYILPDVDPSVGVEI 188
           KY+Y K+ +  KKK    +   +I +    E  Y  P    S+GVE+
Sbjct: 340 KYSYRKYRARTKKKMEDGSSTGKIQIASRVEKEYFKPTYSASIGVEL 386


>At5g06350.1 68418.m00711 expressed protein
          Length = 890

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 131 IVNIIPEETKNKYAYIKHC 149
           IVN IPE+ +N Y YI+ C
Sbjct: 751 IVNCIPEDKENSYLYIQTC 769


>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 protein,
            Xenopus laevis, PIR:T30335
          Length = 1229

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 22   NVRQLVDTLGYLSLKNLQRKQLWVVKVETDKAEASITQSEQVITKMQDSKQTIEIIPQTS 81
            +VR+ VD +   SLK    K++  ++ E +K+  + T+SE  +      KQTI+ + +  
Sbjct: 1082 SVRKEVDDMTKKSLK--LEKEIKTMETEIEKSSKTRTESEMELENTIQEKQTIQEMEEQG 1139

Query: 82   TSADQ 86
             S  Q
Sbjct: 1140 MSEIQ 1144


>At3g32902.1 68416.m04158 hypothetical protein
          Length = 120

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 145 YIKHCSTGKKKRHFTADVN-EITLQGDFENYYILPDVDPSVGVEITTSYEPENYIVEEYQ 203
           ++ + +T     H T  +   + L+ +  +++  P +DP  G  ITT     + +VE+  
Sbjct: 10  FLNYSATTSTANHLTTTLYPSLDLEVECSHHHFSPSLDPLEGTSITTYRHSLDPLVEQQH 69

Query: 204 H 204
           H
Sbjct: 70  H 70


>At2g22795.1 68415.m02704 expressed protein
          Length = 734

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 7/124 (5%)

Query: 47  KVETDKAEASITQSEQVITKMQDSKQTIEIIPQTSTSADQPASEVLQIMDENAIPENFIY 106
           +VE  K    I +SE+   K  D K  IE   + +   D  +SEV+   +E         
Sbjct: 267 EVEEKKENRGIDESEESKEKDIDEKANIEEARENNYKGDDASSEVVHESEEKTSESE--- 323

Query: 107 XXXXXXXXXXXXVKEIPSSGNQEWIVNIIPEETKNKYAYIKHCSTGKKKRHFTADVNEIT 166
                        +E+  S     I +++P  T N  +     STG    H +  +  I 
Sbjct: 324 NSEKVEDKSGIKTEEVEDS----VIKSVLPNTTDNGESSSDEKSTGSSSGHESDSLEGIK 379

Query: 167 LQGD 170
            +G+
Sbjct: 380 SEGE 383


>At5g39810.1 68418.m04822 MADS-box family protein contains
           similarity to hypothetical proteins of [Arabidopsis
           thaliana]
          Length = 329

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 2/107 (1%)

Query: 61  EQVITKMQDSKQTIEIIPQTSTSADQPASEVLQIMDENAIPENFIYXXXXXXXXXXXXVK 120
           EQ +    +   T+  IP ++++ +Q  S +LQ  +E+ + +  +              +
Sbjct: 217 EQNMCMSNNGDATLSQIPLSASNFNQEFSALLQ--EESGLMQQELCNYDQNMFMNNNNFQ 274

Query: 121 EIPSSGNQEWIVNIIPEETKNKYAYIKHCSTGKKKRHFTADVNEITL 167
               S  Q+     + E   N Y  + H   G  +  FT+D+    L
Sbjct: 275 HSFVSNTQDHSAPAVQESVNNNYGLMPHVPCGYDQNLFTSDITNNNL 321


>At2g18630.1 68415.m02169 expressed protein unusual splice site at
           second intron; GA instead of conserved GT at donor site;
           similar to At14a GI:11994571 and GI:11994573
           [Arabidopsis thaliana]
          Length = 393

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 6/55 (10%)

Query: 32  YLSLKNLQRKQLWVVKVETD------KAEASITQSEQVITKMQDSKQTIEIIPQT 80
           Y+S+K +    + V KVE +      KAE +IT+ ++V   + + K+ +++  +T
Sbjct: 295 YISVKEMDNISILVRKVEVEIESLLKKAEFAITEEKEVRLAIDEIKKKLDVFTET 349


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.310    0.129    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,859,547
Number of Sequences: 28952
Number of extensions: 214728
Number of successful extensions: 487
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 9
length of query: 271
length of database: 12,070,560
effective HSP length: 80
effective length of query: 191
effective length of database: 9,754,400
effective search space: 1863090400
effective search space used: 1863090400
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 59 (27.9 bits)