GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001644-TA|BGIBMGA001644-PA|IPR006630|RNA-binding protein
Lupus La, IPR006607|Protein of unknown function DM15
         (1490 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       27   0.96 
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       27   0.96 
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    27   0.96 
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    27   0.96 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    26   1.7  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    25   2.9  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    25   2.9  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    25   2.9  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    25   5.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   5.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   5.1  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    24   8.9  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 366 TQIAPQGNDENSANILSSDEEVLDEDNINQSSDSDCEN 403
           TQ+  +  DE ++  + S+ EV+ E+   + SDS+  N
Sbjct: 428 TQVESEEEDEETSTTVFSNVEVVQEEAKKEESDSNNNN 465


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 79  EQERKPLEEHHQHPQNQAKVDKPEPLQNHHGSNDKHQD 116
           EQ R+  EE  +H Q Q +  +    Q H   +  H D
Sbjct: 73  EQARREREEQERHKQQQQEKQQKIEQQTHSSIHQHHHD 110


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 79  EQERKPLEEHHQHPQNQAKVDKPEPLQNHHGSNDKHQD 116
           EQ R+  EE  +H Q Q +  +    Q H   +  H D
Sbjct: 224 EQARREREEQERHKQQQQEKQQKIEQQTHSSIHQHHHD 261


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 79  EQERKPLEEHHQHPQNQAKVDKPEPLQNHHGSNDKHQD 116
           EQ R+  EE  +H Q Q +  +    Q H   +  H D
Sbjct: 283 EQARREREEQERHKQQQQEKQQKIEQQTHSSIHQHHHD 320


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 1103 PATDGEVPD----EEPREELHFQLDEELDLPPPRHNTFTDAWSDEESD 1146
            P  D E P     EE REE    +     +PPP+H+T T +  D +S+
Sbjct: 1776 PPIDEEPPSVEAVEEEREEAPPSVHSSTVVPPPQHST-TQSLVDPKSE 1822



 Score = 24.6 bits (51), Expect = 5.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 633  FGIKFWLASDVETKYVVNGFPYLGK 657
            F I +W++  V  + +V G P  G+
Sbjct: 1621 FSINYWISEGVPRRKIVMGMPLYGQ 1645



 Score = 23.8 bits (49), Expect = 8.9
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 633 FGIKFWLASDVETKYVVNGFPYLGKDET 660
           + +KFW         +V G P+ G+  T
Sbjct: 398 YAVKFWTKKGFPKSKIVLGVPFFGRSFT 425


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor
          subunit protein.
          Length = 141

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 12/53 (22%), Positives = 28/53 (52%)

Query: 26 PISDPMNMNYRLIKFKILVISRSEVELKITVNLFSSISCDTKYPNSIMLLIFQ 78
          P S  ++    L +FK+L   +  +E+ +T   +S ++C+ ++  S+   + Q
Sbjct: 21 PNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQ 73



 Score = 24.2 bits (50), Expect = 6.8
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 182 SIQKGGYSRLLCEYYFSPDNLARDFFLRRKMSPDGTIPVTLIASF 226
           S+  G YSRL CE  F     +  ++L +   P G I +    SF
Sbjct: 48  SLTTGNYSRLACEIQFV---RSMGYYLIQIYIPSGLIVIISWVSF 89


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 12/28 (42%), Positives = 13/28 (46%)

Query: 1386 FRFYSYGLERKFRPELYQHFQTETMADY 1413
            FRF  Y  E  FRP  Y  F   T  D+
Sbjct: 496  FRFLFYKPEDIFRPNTYNRFLAATGGDH 523


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 26  PISDPMNMNYRLIKFKILVISRSEVELKITVNLFSSISCD 65
           P S  ++    L +FK+L   R  VE+ +T   +S ++C+
Sbjct: 203 PNSVGVSSEVSLPQFKVLGHRRRAVEISLTTGNYSRLACE 242


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D protein.
          Length = 255

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 1031 PTPPHDSLDPNVPEFVPQARRQQDNGSQPGEQP---GGRPRS 1069
            P PP +  D N+P+  P+  +Q +    PG  P     RPR+
Sbjct: 215  PPPPEEDDDSNIPQNNPK-NKQHNFNLPPGAIPVPDKNRPRN 255


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 994  IFPLATMGGPLVAPVSGLLRAVXXXXXXRMFRTSRPGPTPPHDSLDPNVP 1043
            ++PL+  G    +P    L           +R S  G  PPH  L P+ P
Sbjct: 193  MYPLSP-GAGFRSPYPSALPISTSSLPSDFYRFSPTGLIPPHPGLSPHPP 241


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 994  IFPLATMGGPLVAPVSGLLRAVXXXXXXRMFRTSRPGPTPPHDSLDPNVP 1043
            ++PL+  G    +P    L           +R S  G  PPH  L P+ P
Sbjct: 85   MYPLSP-GAGFRSPYPSALPISTSSLPSDFYRFSPTGLIPPHPGLSPHPP 133


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B protein.
          Length = 279

 Score = 23.8 bits (49), Expect = 8.9
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 1197 RRYEEDLWNDTEYTSVDQQPAGGGKASRPRRTARFYAASKDPHATDVIC 1245
            R++++    D EY + DQ P   G  +   +  ++Y  + D   T+ +C
Sbjct: 21   RKHQKQESRDEEYEATDQCPEKYGFFADAEQCDKYYECN-DGQITEKLC 68


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.133    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 343,989
Number of Sequences: 317
Number of extensions: 15181
Number of successful extensions: 66
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 20
length of query: 1490
length of database: 114,650
effective HSP length: 66
effective length of query: 1424
effective length of database: 93,728
effective search space: 133468672
effective search space used: 133468672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)