Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001644-TA|BGIBMGA001644-PA|IPR006630|RNA-binding protein
Lupus La, IPR006607|Protein of unknown function DM15
(1490 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 57 2e-08
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 40 0.002
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 38 0.008
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 35 0.075
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 35 0.099
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 31 1.2
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 31 1.2
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo... 30 2.8
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac... 30 2.8
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 30 2.8
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 29 3.7
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 29 4.9
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 29 4.9
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 28 8.6
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 56.8 bits (131), Expect = 2e-08
Identities = 22/58 (37%), Positives = 42/58 (72%)
Query: 194 EYYFSPDNLARDFFLRRKMSPDGTIPVTLIASFHRVRALTSDVQLVLDAIRDSERLEL 251
EYYFS +NL +D FLR+ M +G +P+ +ASF+R+++ ++D+ L+ A + S+ +++
Sbjct: 334 EYYFSIENLCKDMFLRKHMDDEGYVPLAFLASFNRIKSFSTDLNLLHAACKASDIIDV 391
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 40.3 bits (90), Expect = 0.002
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 194 EYYFSPDNLARDFFL-RRKMSPDGTIPVTLIASFHRVRALTSDVQLVLDAIRDS-ERLEL 251
E+YFS NL D FL DG +P+ IA+F R+R ++ +++A+R S E LE+
Sbjct: 72 EFYFSDTNLPHDKFLWTTSQKNDGWVPIQTIANFKRMRRF-QPLEAIVNALRKSPELLEV 130
Query: 252 -ISGFKVR 258
+G KVR
Sbjct: 131 DEAGEKVR 138
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 38.3 bits (85), Expect = 0.008
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 326 PPKNVKTNKSFYIFRNATNIPQDCSDVESELFDSDGELLDTQIAPQGNDENSANILSSDE 385
P NV S NA+ D + ++ +SD +D + ND+ + N S +E
Sbjct: 331 PQFNVDEQSSISHSSNASENIVDGAVTQANGIESDFTRVDHEPIIVNNDDENGNNESENE 390
Query: 386 EVLDEDNINQSSDSDCEN 403
EV++EDN+N++ ++ +N
Sbjct: 391 EVIEEDNLNRNVIAEAQN 408
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 35.1 bits (77), Expect = 0.075
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 350 SDVESELFDSDGELLDTQIAPQGNDENSANILS-SDEEVLDEDNINQSSDSDCENMPNKR 408
S+ SE DS ++ D +S++ S S+ E ED+ + SS SD E+ + +
Sbjct: 209 SESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSK 268
Query: 409 TRRCMRFPSSSEDEDGSNVPNQQTEIAAD 437
S SED+ S+ + ++E +++
Sbjct: 269 DSDSSSNSSDSEDDSSSDSSDSESESSSE 297
Score = 33.1 bits (72), Expect = 0.30
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 358 DSDGELLDTQIAPQGNDENSANILSSDEEVLDEDNINQSSDSDCENMPNKRTRRCMRFPS 417
+SD +++ + + ND +S++ S+ E ED+ + SS SD E+ + S
Sbjct: 111 ESDSSSSESESSSEDNDSSSSSS-DSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSS 169
Query: 418 SSEDEDGSNVPNQQTEIAAD 437
SSE E S N + ++D
Sbjct: 170 SSESESSSE-DNDSSSSSSD 188
Score = 33.1 bits (72), Expect = 0.30
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 350 SDVESELFDSDGEL------LDTQIAPQGNDENSANILSSDEEVLDEDNINQSSDSDCEN 403
SD ESE D + +++ + +G+D +S++ SS+ E EDN + SS SD E+
Sbjct: 133 SDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSS-SSSESESSSEDNDSSSSSSDSES 191
Query: 404 MPNKRTRRCMRFPSSSEDEDGS 425
+ S SE E S
Sbjct: 192 ESSSEDSDSSSSSSDSESESSS 213
Score = 33.1 bits (72), Expect = 0.30
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 350 SDVESELFDSDGEL------LDTQIAPQGNDENSANILSSDEEVLDEDNINQSSDSDCEN 403
SD ESE D + +++ + +G+D +S++ SS+ E EDN + SS SD E+
Sbjct: 187 SDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSS-SSSESESSSEDNDSSSSSSDSES 245
Query: 404 MPNKRTRRCMRFPSSSEDEDGS 425
+ S SE E S
Sbjct: 246 ESSSEDSDSSSSSSDSESESSS 267
Score = 31.9 bits (69), Expect = 0.69
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 17/90 (18%)
Query: 351 DVESELFDSDGELLDTQIAPQGNDENSANILSSDEEVLDEDNINQSSDSDCENMPNKRTR 410
D +S SD E ++ + +G+D +S++ SS+ E EDN + SS SD E+
Sbjct: 143 DSDSSSSSSDSE---SESSSEGSDSSSSSS-SSESESSSEDNDSSSSSSDSES------- 191
Query: 411 RCMRFPSSSEDED-GSNVPNQQTEIAADGT 439
SSSED D S+ + ++E +++G+
Sbjct: 192 -----ESSSEDSDSSSSSSDSESESSSEGS 216
Score = 31.5 bits (68), Expect = 0.92
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 350 SDVESELFDSDGELLDTQIAPQGNDENSANILS-SDEEVLDEDNINQSSDSDCENMPNKR 408
S+ SE DS ++ D +S++ S S+ E ED+ + SS SD E+ +
Sbjct: 155 SESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSE 214
Query: 409 TRRCMRFPSSSEDEDGSNVPNQQTEIAAD 437
SSSE E S N + ++D
Sbjct: 215 GSDSSSSSSSSESESSSE-DNDSSSSSSD 242
Score = 31.1 bits (67), Expect = 1.2
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 350 SDVESELFDSDGELLDTQIAPQGNDENSANILSSDEEVLDEDNINQSSDSDCENMPNKRT 409
S+ SE DS D++ D +S++ S E+ D+ + S+S E+ + T
Sbjct: 245 SESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDS--T 302
Query: 410 RRCMRFPSSSEDEDGSNVPNQQT--EIAADGT 439
SSS EDG++ + T E++A +
Sbjct: 303 SSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSS 334
Score = 30.7 bits (66), Expect = 1.6
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 351 DVESELFDSDGELLDTQIAPQGNDENSANILSSDEEVLDEDNINQSSDSDCENMPNKR-- 408
D +S SD E ++ + +G+D +S++ SS+ E EDN + SS SD E+ +
Sbjct: 197 DSDSSSSSSDSE---SESSSEGSDSSSSSS-SSESESSSEDNDSSSSSSDSESESSSEDS 252
Query: 409 ----TRRCMRFPSSSEDED-GSNVPNQQTEIAADGT 439
+ SSS+D D SN + + + ++D +
Sbjct: 253 DSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSS 288
Score = 29.9 bits (64), Expect = 2.8
Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 332 TNKSFYIFRNATNIPQDCSDVES-ELFDSDGELLDTQIAPQGNDENSANILSSDEEVLDE 390
+ K F + ++ + ES E + D + + + AP +S+ S +
Sbjct: 53 SQKEFLPYLTTEDVGKHKKTKESLEKSNDDSQKISKKGAPPEKAHSSSEASGSGSSSDES 112
Query: 391 DNINQSSDSDCENMPNKRTRRCMRFPSSSEDED-GSNVPNQQTEIAADGT 439
D+ + S+S E+ + + SSSED D S+ + ++E +++G+
Sbjct: 113 DSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGS 162
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 34.7 bits (76), Expect = 0.099
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 79 EQERKPLEEHHQHPQNQAKVDKPEPLQNHHGSNDK-HQDXXXXXXXXXXXXXXXHKWVPL 137
E E EHH+ P+++ P+ ++H G DK H H P
Sbjct: 346 ELEEHEGPEHHRGPEDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPK 405
Query: 138 DIE-VKGPRQNKH--GP--PHGARPENVRMRSYQ 166
D E KGP+ +H GP H RPE S++
Sbjct: 406 DKEHHKGPKDKEHHQGPKEKHNERPEQNMQSSHE 439
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 78 QEQERKPLE-EHHQHPQNQAKVDKPEPLQNHHGSNDKHQD 116
+E + P + EHH+ P+++ P+ ++H G +KH +
Sbjct: 389 KEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHQGPKEKHNE 428
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 342 ATNIPQDCSDVESELFDSDGELLDTQIAPQGNDENSANILSSDEEVLDEDNINQSSDSDC 401
A +PQD D E E + D + +T + + + ++ N DE V N+N SS SD
Sbjct: 33 AEELPQDEDDYEQEEENEDADQ-NTSVESESEELDNEN---EDERVQKSVNLNASSTSDI 88
Query: 402 E 402
E
Sbjct: 89 E 89
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 31.1 bits (67), Expect = 1.2
Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 4/129 (3%)
Query: 298 NPENNEKEQAKTNADDVVQVKQVACVSLPPKNVKTNKSFYIFRNATNIPQDCSDVESELF 357
+P++ +K+ T D Q A V + N S + ++ ++ +S
Sbjct: 5 SPKSIDKDANSTEVDAAEQ--DAASVKINSTRASPNGSDLLNDDSEAAKITTNEKQSSPV 62
Query: 358 DSDGELLDTQIAPQGND--ENSANILSSDEEVLDEDNINQSSDSDCENMPNKRTRRCMRF 415
DS E + +G D EN + ++++++ DEDN+ ++ + N +
Sbjct: 63 DSHNESPNDTTINKGEDGNENEVDNVNNNDKKEDEDNVEENEEEADANEEEEEDEEDDEE 122
Query: 416 PSSSEDEDG 424
EDE G
Sbjct: 123 DEEDEDESG 131
>SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 489
Score = 29.9 bits (64), Expect = 2.8
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 1199 YEEDLWNDTEYTSVDQQPAGGGKASRPRR--TARFYAASKDPHATDVICSRKHKTRYSLN 1256
Y + +ND Y +D QP G A+R T R + + A V + +H L
Sbjct: 207 YSDPKFNDGYY-GIDDQPVSGLGAARMSALLTYRSKCSFERRFARTVPDASRHPYPDRLP 265
Query: 1257 PPVE-HHVGWIMDVREHRPRTQSTGSSLGASPTLGSSCGSMPQSLPTFHHPSHG 1309
P+ + W++ +R R + S G+SPT S+ S S+ + PS G
Sbjct: 266 TPLTPSNAHWVVHNEGNRNRRERPCRSNGSSPTSESALNSPASSVSSL--PSLG 317
>SPAC1D4.03c |aut12||autophagy associated protein
Aut12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 382 SSDEEVLDEDNINQSSDSDCENMPNKRTRRCMRFPSSSEDE 422
SS +E ++ DN+++S +S+C ++ M PS SED+
Sbjct: 8 SSIKEEVENDNVHRSHESECGSLLLNPGNVLMAAPSVSEDD 48
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 301 NNEKEQAKTNADDVVQVKQVACVSLPPKNVKTNKSFYIFRNATN-IPQDCSDVESELFDS 359
++E + + N+ D + + C KN+ N SF++ NA IP+ + + +
Sbjct: 54 DSEDDNSSLNSVDNNECTNLDCGGKKHKNLSPNPSFHVNINAAEFIPKSHNGYAPKSMNP 113
Query: 360 DGELLDTQIAPQGNDENSANILSS 383
E LD+ P + ++S+ I S
Sbjct: 114 PPEQLDSPCYPHFDQDSSSVIYPS 137
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 29.5 bits (63), Expect = 3.7
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 305 EQAKTNADDVVQVKQVACVSLPPKNVKTNKSFYIFRNATNIPQDCSDVESELFDS-DGEL 363
E+A++ +++++ Q+A S + T+ T+I +D V++++FD D +
Sbjct: 219 ERAESTSNELIDQAQLARDSSIALSEDTSFDGMAGLRGTSIDRDDQSVQTDMFDGMDEDD 278
Query: 364 LDTQIAP------QGNDENSANILS------SDEEVLDEDNINQSSDSDCENMPNKRTRR 411
L QI Q E++A + S+EE +E+ + +++D E NKR R
Sbjct: 279 LAGQIEQGMLELSQDTRESTAEPRAAGEESASEEEEEEEEEEEEENEADDETRENKRQNR 338
Query: 412 CMR 414
+R
Sbjct: 339 LVR 341
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 1269 VREHRPRTQSTGSSLGASPTLGSSCGSMPQSLPTFHHPSH 1308
V EHR + +GS + ASP + LP + H SH
Sbjct: 47 VTEHRKKPTGSGSHITASPWSKLTVRGSSNVLPRYSHASH 86
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 329 NVKTNKSFYIFRNATNIPQDCSDVESELFDSDGELLDTQIAPQ 371
+++ KS I RN+ +P D+ E+ D DG ++ +APQ
Sbjct: 68 SIEKKKSELIVRNSEGLP--VMDIHEEV-DKDGNIISASVAPQ 107
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 28.3 bits (60), Expect = 8.6
Identities = 29/136 (21%), Positives = 63/136 (46%), Gaps = 9/136 (6%)
Query: 300 ENNEKEQAKTNADDVVQVKQVACVSLPPKNVKTNKSFYIFRNATNIPQDCSDVESELFDS 359
+NN ++ ++NA+ + K + V+ + K +F N+P C D +
Sbjct: 89 DNNTPKKEESNAEKLKLDKDSSSVNYENQISKPLITFSDIHETVNVPFLCLDKHDS--KN 146
Query: 360 DGELLDTQIAPQGNDENSANILSS-DEEVLDEDNINQSSDSD---CENMPNKRTRRCMRF 415
+ + + +P ++ + ++ S+ + L E N+ + SD ENM +++ R+ F
Sbjct: 147 EVAINSHEDSPVCLEDITGSLSSTYGNDSLGESNLEELPTSDKIKGENMGSRKKRK--GF 204
Query: 416 PSSSEDEDGSNVPNQQ 431
SED D + +P ++
Sbjct: 205 VIDSEDSD-TGIPREE 219
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.133 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,829,082
Number of Sequences: 5004
Number of extensions: 298793
Number of successful extensions: 999
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 951
Number of HSP's gapped (non-prelim): 40
length of query: 1490
length of database: 2,362,478
effective HSP length: 82
effective length of query: 1408
effective length of database: 1,952,150
effective search space: 2748627200
effective search space used: 2748627200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
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